RnoINT0048815 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107082698-107083244:-
Coord C1 exon
chr10:107083037-107083244
Coord A exon
chr10:107082864-107083036
Coord C2 exon
chr10:107082698-107082863
Length
173 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
TAATATTCTGTCCTTCTCAGGGG
3' ss Score
9.1
Exon sequences
Seq C1 exon
GCCTCTCTAGTCCACACCACGGAAACCATCCGCATCCGATACTTCATGGACCTGCTCATGGCGAAGGCGTGGCCCGTGATGCTGGTGGGCAATGCGGGCACTGGCAAGTCGGTGCTGATGGGGGACAAGCTGGAGAACCTCAGTACCGACGATTACCTGGTGCAGGCTGTGCCCTTCAACTTCTACACGACCTCAGCCATGCTGCAGG
Seq A exon
GTGAGAGGGCCCGGCCCCAGCCTCACCCCTGCCCCCCACCCCCAATCTCTGGAACAGGCACACTCGTGGTCCTGATCTCTGGCCTTCCACTTCCATTTCCCAACAGGAGGCAGTCAGTCCCTGCCCTAATAGGCACCAGCTCAGGGTGGTAGATAATATTCTGTCCTTCTCAG
Seq C2 exon
GGGTGCTGGAGAAGCCTCTGGAAAAGAAGTCAGGGAGGAACTATGGCCCGCCAGGCACTAAGAAGCTAATCTACTTTATCGATGACATGAACATGCCAGAAGTGGACAAGTACGGCACGGTGGCCCCACACACCCTCATCCGCCAGCACATGGACCACAGACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.089
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(25.4=100)
A:
NA
C2:
PF127752=AAA_7=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTCCACACCACGGAAACCA
R:
GGCCATAGTTCCTCCCTGACT
Band lengths:
249-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]