RnoEX0028482 @ rn6
Exon Skipping
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107082698-107083579:-
Coord C1 exon
chr10:107083406-107083579
Coord A exon
chr10:107083037-107083244
Coord C2 exon
chr10:107082698-107082863
Length
208 bp
Sequences
Splice sites
3' ss Seq
CCCCACTACCACCCTTCCAGGCC
3' ss Score
6.8
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
CTCATTGATTATCGAGTGGAGTTCAGCAAGTGGTGGATCAACGAATTTAAAACAATCAAGTTACCCTCGCAGGGGACCATTTTTGACTACTACATTGACCCGGAAACAAAGAAATTCCTGCCCTGGACAGATAAAGTGCCTAACTTTGAGCTGGATCCCGACATCCCCCTGCAG
Seq A exon
GCCTCTCTAGTCCACACCACGGAAACCATCCGCATCCGATACTTCATGGACCTGCTCATGGCGAAGGCGTGGCCCGTGATGCTGGTGGGCAATGCGGGCACTGGCAAGTCGGTGCTGATGGGGGACAAGCTGGAGAACCTCAGTACCGACGATTACCTGGTGCAGGCTGTGCCCTTCAACTTCTACACGACCTCAGCCATGCTGCAGG
Seq C2 exon
GGGTGCTGGAGAAGCCTCTGGAAAAGAAGTCAGGGAGGAACTATGGCCCGCCAGGCACTAAGAAGCTAATCTACTTTATCGATGACATGAACATGCCAGAAGTGGACAAGTACGGCACGGTGGCCCCACACACCCTCATCCGCCAGCACATGGACCACAGACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028-'52-56,'52-55,53-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.089
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.3=15.5)
A:
PF127752=AAA_7=FE(25.4=100)
C2:
PF127752=AAA_7=FE(20.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAAGTGGTGGATCAACGA
R:
CATGTGCTGGCGGATGAGG
Band lengths:
303-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]