GgaEX7009569 @ galGal4
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10084784-10085953:+
Coord C1 exon
chr18:10084784-10084957
Coord A exon
chr18:10085504-10085711
Coord C2 exon
chr18:10085788-10085953
Length
208 bp
Sequences
Splice sites
3' ss Seq
CAACCGTGTGCCTTCCCCAGGCC
3' ss Score
9.29
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CTCACAGATTACCGTGCAGAGTTCAGCAAGTGGTGGGTGAACGAGTTCAAAACCGTCAAGTTTCCTGCTCAGGGGATGATATTCGACTATTACATCGACCCAGAAACAAAGAAATTCATGCCCTGGACTGATAAAGTGCCAACATTCAAACTCGACCCCGAAGTTCCCTTGCAG
Seq A exon
GCCTCCATGGTGCACACCACCGAGACCGTCCGCATCCGCTACTTCATGGACCTGCTGATGGAGAAGCAGCGGCCGGTGATGCTGGTGGGGAATGCGGGCACGGGGAAAACTGTGCTGATGTGGGACAAGCTCGAAGCTCTCAACACAGAGGAGTACCTGGTGCAGTCTGTGCCTTTTAACTTCTACACCACCTCTGCCATGCTGCAGG
Seq C2 exon
CCATTCTGGAGAAGCCTCTAGAAAAGAAGTCGGGGAGGAACTATGGCCCACCAGGCACTAAGAGGCTCATTTACTTCATTGATGACTTGAACATGCCCGAGGTGGACAAGTATGGCACTGTGGCTCCGCACACACTCATCCGGCAGCACATGGACCATGGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106-'50-56,'50-55,52-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.089
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.3=15.5)
A:
PF127752=AAA_7=FE(25.4=100)
C2:
PF127752=AAA_7=FE(20.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCGTGCAGAGTTCAGCAAG
R:
GGAGCCACAGTGCCATACTTG
Band lengths:
292-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]