HsaEX6025151 @ hg38
Exon Skipping
Gene
ENSG00000187775 | DNAH17
Description
dynein axonemal heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr17:78484868-78486133:-
Coord C1 exon
chr17:78485960-78486133
Coord A exon
chr17:78485550-78485757
Coord C2 exon
chr17:78484868-78485033
Length
208 bp
Sequences
Splice sites
3' ss Seq
CCTTCCCTCCCCTGCCCCAGGCC
3' ss Score
9.47
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
CTTGTGGATTATCGAGTGGAGTTCAGTAAATGGTGGATCAACGAATTCAAGACTATCAAGTTCCCCTCGCAGGGAACGATTTTTGACTACTACATTGATCCTGACACAAAAAAGTTCCTGCCCTGGACAGATAAAGTGCCCTCCTTTGAGCTGGATCCCGATGTCCCACTGCAG
Seq A exon
GCCTCTTTGGTCCACACCACGGAAACCATCCGCATCCGCTACTTCATGGACCTGCTCATGGAGAAGTCCTGGCCGGTGATGCTGGTGGGGAACGCGGGGACGGGCAAGTCGGTGCTGATGGGGGACAAGCTGGAAAGCCTGAACACGGACAACTACCTGGTGCAGGCTGTGCCCTTCAACTTCTACACGACCTCAGCCATGCTGCAGG
Seq C2 exon
GGGTGCTGGAGAAGCCGCTGGAGAAGAAATCGGGGAGGAACTACGGGCCGCCAGGCACTAAGAAGCTCGTCTACTTCATCGACGACATGAACATGCCCGAGGTGGACAAGTATGGGACGGTGGCCCCGCACACCCTCATCCGGCAGCACATGGACCACCGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-'62-72,'62-71,63-72
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.107
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.3=15.5)
A:
PF127752=AAA_7=FE(25.4=100)
C2:
PF127752=AAA_7=FE(20.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGATTATCGAGTGGAGTTCA
R:
CACCGTCCCATACTTGTCCAC
Band lengths:
294-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains