MmuEX0014973 @ mm10
Exon Skipping
Gene
ENSMUSG00000033987 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:118072845-118074062:-
Coord C1 exon
chr11:118073889-118074062
Coord A exon
chr11:118073516-118073723
Coord C2 exon
chr11:118072845-118073010
Length
208 bp
Sequences
Splice sites
3' ss Seq
CATCCTGCTACGGCCCCCAGGCC
3' ss Score
6.28
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
CTCATTGATTATCGAGTGGAGTTCAGCAAGTGGTGGATCAATGAATTTAAAACAATCAAGTTACCCTCGCAGGGGACCATTTTTGACTACTACATTGACCCTGAAACAAAAAAATTCCTGCCTTGGACAGATAAAGTGCCTAACTTTGAGCTGGATCCCGACATCCCACTACAG
Seq A exon
GCCTCTCTAGTCCACACCACAGAAACCATCCGCATCCGGTACTTCATAGACCTGCTCATGGAGAAGGCATGGCCCGTGATGCTGGTGGGCAACGCGGGCACTGGCAAGTCGGTGCTGATGGGTGACAAGCTGGAGAACCTCAGCACCGACGACTACCTGGTGCAGGCCGTGCCTTTCAACTTCTACACGACCTCAGCCATGCTGCAGG
Seq C2 exon
GGGTGCTGGAGAAGCCTCTGGAAAAGAAGTCAGGGAGGAACTACGGCCCCCCAGGCACTAAGAAGCTGATCTACTTCATCGATGACATGAACATGCCAGAGGTGGACAAGTATGGCACGGTGGCCCCACACACCCTCATCCGCCAGCACATGGACCACAGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-'62-65,'62-64,63-65
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.089
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(3.3=15.5)
A:
PF127752=AAA_7=FE(25.4=100)
C2:
PF127752=AAA_7=FE(20.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTGGAGTTCAGCAAGTGG
R:
CTGGCGGATGAGGGTGTGT
Band lengths:
308-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types