RnoEX6050802 @ rn6
Exon Skipping
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107083037-107083901:-
Coord C1 exon
chr10:107083679-107083901
Coord A exon
chr10:107083406-107083579
Coord C2 exon
chr10:107083037-107083244
Length
174 bp
Sequences
Splice sites
3' ss Seq
CGCCTCCCTCCTCCTAACAGCTC
3' ss Score
10.78
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GTGGCTCACAAGAGGCGTGCCCACGTGCCTGGACAAGCTGCGCTTCGGTTTCAAGAGGATCACCCCTGTGCCGGAAATCACCGTCATCCAGACCATCCTGTACCTGCTGGAGTGTCTGCTCACAGAGAAGAATGCCCCGCCCGACTCCCCCAAGGAGCTGTACGAGCTGTACTTCGTGTTCGCCTGCTTCTGGGCTTTCGGAGGCGCCATGTTCCAGGACCAG
Seq A exon
CTCATTGATTATCGAGTGGAGTTCAGCAAGTGGTGGATCAACGAATTTAAAACAATCAAGTTACCCTCGCAGGGGACCATTTTTGACTACTACATTGACCCGGAAACAAAGAAATTCCTGCCCTGGACAGATAAAGTGCCTAACTTTGAGCTGGATCCCGACATCCCCCTGCAG
Seq C2 exon
GCCTCTCTAGTCCACACCACGGAAACCATCCGCATCCGATACTTCATGGACCTGCTCATGGCGAAGGCGTGGCCCGTGATGCTGGTGGGCAATGCGGGCACTGGCAAGTCGGTGCTGATGGGGGACAAGCTGGAGAACCTCAGTACCGACGATTACCTGGTGCAGGCTGTGCCCTTCAACTTCTACACGACCTCAGCCATGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028-'51-55,'51-54,52-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(3.3=15.5)
C2:
PF127752=AAA_7=FE(25.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACAGAGAAGAATGCCCC
R:
TCGTCGGTACTGAGGTTCTCC
Band lengths:
258-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]