DreEX6020682 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10404358-10409147:-
Coord C1 exon
chr6:10409016-10409147
Coord A exon
chr6:10408746-10408919
Coord C2 exon
chr6:10404358-10404562
Length
174 bp
Sequences
Splice sites
3' ss Seq
TATTCATTTTCTTTGACCAGCTA
3' ss Score
5.65
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ACTCTGTGTTGTCTGCTGGACTGCTTGCTGACTGATGAAAACACACCTCCAGACTCTCCTCGTGAACTCTATGAGCTCTACTTTGTGTTTGCAAGTGTTTGGGCCTTTGGAGGAGCTCTTTTTCAGGACCAT
Seq A exon
CTAATAGACTATCGTTCAGAGTTCAGTCGTTGGTGGTGTAAGGAGATGAGAGCGGTGAAGTTTCCTTCTCAAGGTTCAGTGTTTGATTACTACATCGACCCAAACACCAAGCGCTTCACGCCATGGAGCGAACGCACACCTCCCTTTGAGCTGGAGCCTGACATCCCTTTGCAG
Seq C2 exon
ACTGTATTGGTGCACTCTGCAGAGACAATTTGCTTGACATACTTCATCGAGTTACTTCTGCAGAAGGGGAAGCCAGTGATGCTTGTAGGTAATGCTGGTGTTGGGAAAACTATCCTGGTCTGGGACAAGATTTCCAAACTCAAAGAGGAATTCATGGTTGCCAAAGTGCCATTCAATTACTACACAACTTCAGCTATGTTGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'40-42,'40-41,41-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(3.3=15.5)
C2:
PF127752=AAA_7=FE(25.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGACTCTCCTCGTGAA
R:
GGCACTTTGGCAACCATGAAT
Band lengths:
257-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]