GgaEX6015774 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1083907-1088557:+
Coord C1 exon
chr18:1083907-1084081
Coord A exon
chr18:1087504-1087677
Coord C2 exon
chr18:1088350-1088557
Length
174 bp
Sequences
Splice sites
3' ss Seq
CTTCCCTTTCTGTCTCACAGCTT
3' ss Score
11.28
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTTTAAGAAGATTATTCCCATTCCTGAGCAGAGCATGGTTCAGATGTTGTGTTACCTCCTTGAGTGCCTCCTGACGGAGGAGAACACACCTCCCGACTGCCCCAAGGAGCTGTATGAACTTTACTTTGTCTTTGCTGCTGTCTGGGCCTTTGGTGGATCAATGTTTCAAGACCAG
Seq A exon
CTTGTGGACTACAGAGTGGAGTTCAGCAAGTGGTGGGTGGCGGAATTCAAGACCATCAAGTTTCCCTCCCAGGGAACCGTCTTTGACTTTTACATCGATCCAGAAACAAAGAAGTTTGAGCCTTGGTCTAAACTGATCCCCCAGTTTGAATTTGATCCAGAAGTGCCATTACAG
Seq C2 exon
GCATGCCTGGTGCCCACGGCCGAGACGGTCCGGCTGCGGTACTTCATGGATCGGCTCCTGGAGCGCCAGCGCCCCGTGATGCTGGTGGGCAGTGCGGGCACTGGGAAGTCTGTGCTGGTGGGGGACAAACTCTCCTTGCTGGACACGGACGCATACGTGGTGAAGAAGGTCCCGTTCAACTACTACACCACCTCTGCCATGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'28-28,'28-27,29-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(3.3=15.5)
C2:
PF127752=AAA_7=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCAAGGAGCTGTATGAAC
R:
GAACGGGACCTTCTTCACCAC
Band lengths:
254-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]