MmuEX6086220 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:66005002-66017539:-
Coord C1 exon
chr11:66017365-66017539
Coord A exon
chr11:66005659-66005832
Coord C2 exon
chr11:66005002-66005209
Length
174 bp
Sequences
Splice sites
3' ss Seq
GACCTGCTTTGTTTTTGCAGCTT
3' ss Score
9.82
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATTTAAGAAAATAATTCCAGTCCCAGAGCAGAGTATGATCCAGATGCTGTGCTACCTCCTTGAGTGCCTCCTGACAAAGGAGGATATCCCTGCAGACTGCCCCAAGGAAATATATGAACTCTATTTTGTGTTTGCTGCCATCTGGGCATTTGGCAGTGCTGTGATCCAAGATCAG
Seq A exon
CTTGTAGACTACCGGGCAGAGTTCAGCAAATGGTGGCTGACTGAGTTTAAAACAGTCAAGTTTCCTTCCCAAGGAACTGTCTTTGACTACTACATAGACCCAGAGACCAAGAAATTTGAGCCCTGGGCCAAGCTCATCCCCCAGTTTGAATTTGACCCAGAGATGCCTTTGCAG
Seq C2 exon
GCTTGTTTGGTACACACAAGTGAGACCATCCGGGTGTGCTACTTCATGGAGCGGCTCATGCAATGGAGGCGGCCGGTTATGCTGGTTGGCCCTGCAGGCTCAGGCAAGTCTGTGCTGGTGGGAGCAAAGCTGTCCAGCCTTAACCCTGAGGAATACATGGTGAAAAATGTGCCCTTCAACTACTATACTACGTCAGCAATGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'41-48,'41-47,42-48
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(3.3=15.5)
C2:
PF127752=AAA_7=PU(24.8=98.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATATCCCTGCAGACTGCC
R:
TCCTCAGGGTTAAGGCTGGAC
Band lengths:
247-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types