BtaEX6087261 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31102336-31113768:+
Coord C1 exon
chr19:31102336-31102510
Coord A exon
chr19:31112645-31112818
Coord C2 exon
chr19:31113561-31113768
Length
174 bp
Sequences
Splice sites
3' ss Seq
GACTTGCTTTGTTTGGGCAGCTC
3' ss Score
6.07
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATTTAAGAAGATAATTCCAGTCCCAGAGCAGAGCACAGTTCAGATGCTGTGCCACCTTCTTGAGTGTCTGCTGACCGAGGAGGACATCCCCGCAGACTGCCCCAAAGACACCTACGAGCTTTACTTTGTGTTTGCTGCCATCTGGGCTTTTGGTGGAGCACTGGTCCACGACCAG
Seq A exon
CTCGTGGACCACCGGGCAGAGTTCAGCAAATGGTGGCTCAGTGAGTTCAAGACCATCAAGTTTCCCTCCCAAGGAACCATCTTTGACTATTACATAGACCCAGAGACCAAGAAATTCGAGCCTTGGTCCAGGCTCATCCCGCAGTTTGAATTTGACCCTGAGACACCTCTGCAG
Seq C2 exon
GCCTGCCTGGTGCACACCACTGAGACCATATGCCTCTGCTACTTCCTGGAGCGGCTCCTGGCGCGGCGGCGGCCTGTCATGCTGGTGGGAACTGCGGGCACTGGCAAGTCGGTGCTGGTGGGGGCGAAGCTGGCCAGCCTGGACCCTGAGGCGTACCTGGTGAAAAACGTGCCCTTCAACTACTACACCACATCAGCCATGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'47-56,'47-55,48-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(3.3=15.5)
C2:
PF127752=AAA_7=FE(25.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGCACAGTTCAGATGCT
R:
CAGTTCCCACCAGCATGACAG
Band lengths:
242-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]