RnoEX6047737 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52530831-52537183:-
Coord C1 exon
chr10:52537009-52537183
Coord A exon
chr10:52531483-52531656
Coord C2 exon
chr10:52530831-52531038
Length
174 bp
Sequences
Splice sites
3' ss Seq
GACCAGCTTTGTCTTTGCAGCTT
3' ss Score
7.73
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ATTTAAGAAGATAATCCCAGTCCCAGAGCAGAGCATGATCCAGATGCTGTGCTACCTCCTTGAGTGCCTCCTGACAAAGGAGGCTGTCCCTGCAGACTGCCCCAAGGAAATCTATGAACTCTATTTTGTGTTTGCTGCCATCTGGGCATTTGGCAGTTCCATGGTCCAAGATCAG
Seq A exon
CTTGTAGACTACCGGGCAGAGTTCAGCAAATGGTGGCTGACTGAGTTCAAAACGGTCAAATTTCCTTCCCAAGGAACTGTCTTTGACTACTACATAGACCAAGAGACCAAGAAATTTGAGCCTTGGGGCAAGCTCATCCCCCAGTTTGAATTTGACCCTGAGATGCCTTTGCAA
Seq C2 exon
GCTTGTTTGGTACACACAAGTGAGACCATCCGTGTGTGCTACTTCATGGAGCGGCTCATGGAACGGCGGCGGCCGGTTATGCTGGTCGGCTCTGCAGGCTCAGGCAAGTCTGTGCTGGTGGGAGCAAAGCTGTCCAGCCTTAACCCTGAGGAATACATGGTGAAAAATGTGCCCTTCAACTACTATACTACATCAGCAATGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'49-50,'49-49,51-50=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(3.3=15.5)
C2:
PF127752=AAA_7=FE(25.4=100)
Main Skipping Isoform:
ENSRNOT00000005583fB4273
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGATCCAGATGCTGTGCT
R:
CACAGACTTGCCTGAGCCTG
Band lengths:
257-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]