HsaEX6021140 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11763440-11769329:+
Coord C1 exon
chr17:11763440-11763614
Coord A exon
chr17:11768453-11768626
Coord C2 exon
chr17:11769122-11769329
Length
174 bp
Sequences
Splice sites
3' ss Seq
GACTGTCTTTGTTTTTGCAGCTT
3' ss Score
9.9
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTTTAAGAAGATCATTCCCATCCCAGAGCAGAGCATGGTTCAGATGGTGTGTCACCTTCTGGAATGTCTCCTGACCACGGAGGACATCCCTGCAGACTGCCCTAAGGAAATTTATGAGCATTATTTTGTGTTTGCTGCCATCTGGGCTTTCGGCGGAGCAATGGTCCAAGATCAG
Seq A exon
CTTGTGGACTACCGGGCAGAGTTCAGCAAATGGTGGCTGACTGAGTTCAAAACAGTCAAGTTTCCTTCCCAAGGAACCATCTTTGACTATTACATCGACCCAGAGACCAAGAAATTCGAGCCTTGGTCCAAGCTCGTCCCCCAGTTCGAATTTGACCCCGAGATGCCCTTGCAG
Seq C2 exon
GCGTGTTTGGTGCACACGAGTGAGACCATCCGTGTGTGCTACTTCATGGAGCGGTTGATGGCGCGGCAGCGGCCTGTCATGCTGGTGGGCACGGCTGGCACTGGCAAGTCGGTGCTGGTGGGAGCTAAGCTGGCCAGCCTTGACCCCGAGGCATACCTGGTGAAAAACGTGCCATTCAACTACTACACCACGTCAGCAATGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'66-72,'66-61,68-72=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(3.3=15.5)
C2:
PF127752=AAA_7=FE(25.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGCAGAGCATGGTTCAG
R:
CAAGATCGCTCCACTGCACTC
Band lengths:
250-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains