MmuEX6086220 @ mm9
Exon Skipping
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65818504-65831041:-
Coord C1 exon
chr11:65830867-65831041
Coord A exon
chr11:65819161-65819334
Coord C2 exon
chr11:65818504-65818711
Length
174 bp
Sequences
Splice sites
3' ss Seq
GACCTGCTTTGTTTTTGCAGCTT
3' ss Score
9.82
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATTTAAGAAAATAATTCCAGTCCCAGAGCAGAGTATGATCCAGATGCTGTGCTACCTCCTTGAGTGCCTCCTGACAAAGGAGGATATCCCTGCAGACTGCCCCAAGGAAATATATGAACTCTATTTTGTGTTTGCTGCCATCTGGGCATTTGGCAGTGCTGTGATCCAAGATCAG
Seq A exon
CTTGTAGACTACCGGGCAGAGTTCAGCAAATGGTGGCTGACTGAGTTTAAAACAGTCAAGTTTCCTTCCCAAGGAACTGTCTTTGACTACTACATAGACCCAGAGACCAAGAAATTTGAGCCCTGGGCCAAGCTCATCCCCCAGTTTGAATTTGACCCAGAGATGCCTTTGCAG
Seq C2 exon
GCTTGTTTGGTACACACAAGTGAGACCATCCGGGTGTGCTACTTCATGGAGCGGCTCATGCAATGGAGGCGGCCGGTTATGCTGGTTGGCCCTGCAGGCTCAGGCAAGTCTGTGCTGGTGGGAGCAAAGCTGTCCAGCCTTAACCCTGAGGAATACATGGTGAAAAATGTGCCCTTCAACTACTATACTACGTCAGCAATGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'39-39,'39-38,40-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(3.3=15.5)
C2:
PF127752=AAA_7=PU(24.8=98.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATATCCCTGCAGACTGCC
R:
TCCTCAGGGTTAAGGCTGGAC
Band lengths:
247-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: