MmuEX6083434 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118020188-118027579:-
Coord C1 exon
chr12:118027448-118027579
Coord A exon
chr12:118023810-118023983
Coord C2 exon
chr12:118020188-118020392
Length
174 bp
Sequences
Splice sites
3' ss Seq
GGGTTCTCCATTCTTCGTAGCTT
3' ss Score
5.7
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ACTATTTGTACTCTTTTGGAGTGTTTGTTGACTCCCGAGAACATACCTCCTGACAGTCCTAAAGAGACCTATGAAGTCTATTTTGCCTTTGCTTGTGTCTGGACATTTGGAGGCACCCTACTACGGGATCAG
Seq A exon
CTTTCTGATTATCAAGCCGACTTCAGTAGATGGTGGCATAAGGAAATGAAAGCAGTGAAGTTTCCATCCCAGGGAACCATCTTTGATTATTATCTGGACCACAAAACTAAAAAATTTTTGCCTTGGACTGACAAGGTTCCCCAGTTCTCCATGGATGCTGATGCGCCCCTGAAG
Seq C2 exon
ACAGTTCTGGTACACACACCAGAGACAACTCGTCTGAGGTATTTTACTGAGTTGCTACTTTGCAAAGGCAAACCGATAATGCTGGTTGGAAATGCAGGAGTGGGGAAAACGGTCTTTTTGAGCAACACCCTGGCAAGTCTCTCTGAGAACTACATAGTATCCTGTGTGCCTTTCAACTACTACACAACATCAGCAGCCCTGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'55-55,'55-54,56-55
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(3.3=15.5)
C2:
PF127752=AAA_7=FE(25.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCTTTGCTTGTGTCTGGA
R:
GGGCTGCTGATGTTGTGTAGT
Band lengths:
249-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types