RnoEX6030083 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145926937-145934726:-
Coord C1 exon
chr6:145934595-145934726
Coord A exon
chr6:145931111-145931284
Coord C2 exon
chr6:145926937-145927141
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCTCCCATTCTTCTTCATAGCTT
3' ss Score
7.9
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ACAATTTGTACTCTTTTGGAGTGTTTGCTGACTCCAGAGAACATACCTTCTGACAGTCCTAAAGAGACCTATGAGGTCTATTTTGTCTTCGCTTGTGTCTGGACATTTGGAGGCACCCTACTACGAGATCAG
Seq A exon
CTTTCTGATTACCAAGCCGACTTCAGTAGATGGTGGCATAAGGAAATGAAAGCAGTGAAGTTTCCATCCCAGGGAACCATCTTTGATTATTATCTGGACCACAAAACTAAAAAATTTTTGCCTTGGACTGACAAGGTCCCCCAGTTCACCATGGATGCAGATGCGCCCCTGAAG
Seq C2 exon
ACAGTCCTGGTACACACACCAGAGACAACTCGTCTTAGGTATTTTACTGAGTTGCTACTTAACAAAGGCAAACCTCTGATGCTGGTTGGAAATGCGGGAGTGGGAAAAACCGTCTTTTTGAGCGACACCCTGGCAAGTATTTCTGAGGACTATATAGTGTCCCGTGTGCCTTTCAACTACTACACGACATCGGCAGACCTGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'59-60,'59-59,60-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(3.3=15.5)
C2:
PF127752=AAA_7=FE(25.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTGTTTGCTGACTCCAG
R:
AGGGTGTCGCTCAAAAAGACG
Band lengths:
247-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]