DreEX6040396 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19483530-19489164:-
Coord C1 exon
chr16:19489033-19489164
Coord A exon
chr16:19488537-19488710
Coord C2 exon
chr16:19483530-19483734
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGATGGATCAAACAGCTT
3' ss Score
2.72
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
ACTCTGTGCTCCCTGCTGGATTGTCTGTTAACTCCTGAAAACATCCCAGCGGATTCTCCAAGGGAACTGTATGAGATGTACTTTGTTTTTGCCTGTGTGTGGGCTTTTGGTGGAGCAACCGTCCAGGATCAG
Seq A exon
CTTCATGACTATCGGGCTGAGTTCAGCCAGTGGTGGATCAAAGAGATGAAGAGTGTGAAGTTTCCTGTCCAGGGCTCTGTGTTTGACTTCTGCTTAGATCCTCACTCCAAACGCTTTGTGCCCTGGACCGACAGGATACCTGCTTTTGAGATGGACCCCGATATACCTGTACAG
Seq C2 exon
GCTGTGTTAGTGCCTACAGTAGAGACAGTCAGACTGCAGTATTTGATGTCCATGTTGCTGAAGGCGTCTCAGCCGGTCATGCTGGTTGGCGGAGCAGGAACAGGGAAGACCGCCGTCGTCAAGAACCTTCTGGAAACACTACCAGAAAACTTCATAACGACTAAAGTTCCTCTTCATTTCTACACAACTGCGTTAATGCTACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(3.3=15.5)
C2:
PF127752=AAA_7=FE(25.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGCTGGATTGTCTGTT
R:
CCAGAAGGTTCTTGACGACGG
Band lengths:
257-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]