BtaEX0011574 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30597996-30610076:+
Coord C1 exon
chr4:30597996-30598127
Coord A exon
chr4:30605734-30605907
Coord C2 exon
chr4:30609872-30610076
Length
174 bp
Sequences
Splice sites
3' ss Seq
ATTTCTCTTGTTCTCCTTAGCTT
3' ss Score
8.83
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
ACTATTTGTACTCTTCTGGAGTGTTTATTGACTCCTGAAAATGTACCTTCTGACAGCCCAAAGGAAGTTTATGAGGCCTACTTTGTCTTTGCTTGTATCTGGGCGTTCGGAGGCACTCTGCTACAAGATCAG
Seq A exon
CTTTCTGGTTGTCAAGCTGAATTCAGTCAGTGGTGGCATAAAGAGATGAAAGCAGTGAAGTTTCCATCCCAGGGAACAATTTTTGATTATTATCTGGACCACAAAAGTAAGAAGTTTTTGCCTTGGGCTGATAAAATCCCCCAATTTACTATGGATCCAGAAATACCTTTGCAG
Seq C2 exon
AGAGCTCTGGTTCACACAACAGAGACAACCCGTCTTCGATATTTTGTGGAGTTGCTGCTTGAGAAAGGACAGCCATTGATGCTGGTAGGAAACGCTGGAGTAGGAAAAACAGTCTTTGTAGGTGACATGCTGGCAGGTCTGTCTGAGGCTTATATAGTATCCCGTGTGCCTTTCAACTACTGCACAACATCGGCAGCCCTGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078_MULTIEX3-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(3.3=15.5)
C2:
PF127752=AAA_7=FE(25.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTGCTTGTATCTGGGCGT
R:
CTGCCGATGTTGTGCAGTAGT
Band lengths:
243-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development