BtaEX6090379 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54366868-54367876:+
Coord C1 exon
chr19:54366868-54367150
Coord A exon
chr19:54367235-54367408
Coord C2 exon
chr19:54367669-54367876
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCATTTTTGTCTCCCAACAGCTT
3' ss Score
11.05
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GGTGGTAAGCAGCTGGATCGAGAGGCGCAAGGTGCAGTCAGAGAAGGCCAACCTGATGATACTCTTCGACAAGTACCTGCCCACCTGCCTGGACAAGCTCCGCTTCGGGTTTAAGAAGATCACGCCGGTGCCTGAGATCACCATCATCCAGACGATCCTCTACCTGCTGGAGTGCCTCCTAACCGAGAAGAACGCGCCGCCCGACTCCGCCAAGGAGCTCTATGAGCTCTACTTCGTGTTCGCCTGCTTCTGGGCCTTCGGGGGGGCCATGTTCCAGGACCAG
Seq A exon
CTTGTAGATTATCGGGTCGAGTTCAGCAGGTGGTGGATCAACGAATTTAAGACGATCAAGTTCCCCTCTCAGGGGACGGTCTTCGACTACTACATAGACCCTGACACCAAGAAGTTCCTGCCATGGACAGACAAAGTGCCCGCCTTCGAGCTGGACCCCGACGTCCCGCTGCAG
Seq C2 exon
GCCTCACTGGTGCACACCACAGAAACCATCCGCATCCGCTACTTCATGGACCTGCTCATGGAGAAGTCGTGGCCAGTCATGCTGGTGGGGAACGCGGGGACAGGCAAGTCGGTGCTAATGGGGGACAAGCTGGACAGCCTGAGCACAGACGACTACCTGGTGCAGGCCGTGCCCTTCAACTTCTACACGACCTCGGCCATGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920-'44-46,'44-45,45-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(3.3=15.5)
C2:
PF127752=AAA_7=FE(25.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAGAAGATCACGCCGGTGC
R:
CATGACTGGCCACGACTTCTC
Band lengths:
254-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]