GgaEX7009570 @ galGal4
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10084423-10085711:+
Coord C1 exon
chr18:10084423-10084705
Coord A exon
chr18:10084784-10084957
Coord C2 exon
chr18:10085504-10085711
Length
174 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTGGTTCCCTCCAGCTC
3' ss Score
10.31
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
TGTGGTGACCAGTTGGATCGAGAAGAGGGCCGTGCAGTCTGAGAAGGCCAATCTGACGATCCTGTTCGACAAGTACGTGCCCGTGTGCCTGGAGAAGCTCAAGTTTGGCTTCAAGAAGATCACCCCCATCCCTGAGATCACGGTGATACAGATGATCCTGTACCTGCTGGAGTGCCTTCTGACACCACAGAACGTGCCACCGGACTCTCCCCGTGAGCTCTATGAGCTCTTCTTTGTCTTTGCGTGCATCTGGGCCTTTGGCGGGGCCATGTTCCAGGACCAG
Seq A exon
CTCACAGATTACCGTGCAGAGTTCAGCAAGTGGTGGGTGAACGAGTTCAAAACCGTCAAGTTTCCTGCTCAGGGGATGATATTCGACTATTACATCGACCCAGAAACAAAGAAATTCATGCCCTGGACTGATAAAGTGCCAACATTCAAACTCGACCCCGAAGTTCCCTTGCAG
Seq C2 exon
GCCTCCATGGTGCACACCACCGAGACCGTCCGCATCCGCTACTTCATGGACCTGCTGATGGAGAAGCAGCGGCCGGTGATGCTGGTGGGGAATGCGGGCACGGGGAAAACTGTGCTGATGTGGGACAAGCTCGAAGCTCTCAACACAGAGGAGTACCTGGTGCAGTCTGTGCCTTTTAACTTCTACACCACCTCTGCCATGCTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106-'49-55,'49-51,50-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127752=AAA_7=PU(3.3=15.5)
C2:
PF127752=AAA_7=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCCTGGAGAAGCTCAAG
R:
CAGCAGGTCCATGAAGTAGCG
Band lengths:
258-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]