RnoINT0048812 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107083406-107083901:-
Coord C1 exon
chr10:107083679-107083901
Coord A exon
chr10:107083580-107083678
Coord C2 exon
chr10:107083406-107083579
Length
99 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
CGCCTCCCTCCTCCTAACAGCTC
3' ss Score
10.78
Exon sequences
Seq C1 exon
GTGGCTCACAAGAGGCGTGCCCACGTGCCTGGACAAGCTGCGCTTCGGTTTCAAGAGGATCACCCCTGTGCCGGAAATCACCGTCATCCAGACCATCCTGTACCTGCTGGAGTGTCTGCTCACAGAGAAGAATGCCCCGCCCGACTCCCCCAAGGAGCTGTACGAGCTGTACTTCGTGTTCGCCTGCTTCTGGGCTTTCGGAGGCGCCATGTTCCAGGACCAG
Seq A exon
GTGACAGGCACCCCGTGGGGACCCGGCTATCCAGACCAGGTCACCCTGCAACCCTCTCACACGAGCCTTGGGTCCTTCCCGCCTCCCTCCTCCTAACAG
Seq C2 exon
CTCATTGATTATCGAGTGGAGTTCAGCAAGTGGTGGATCAACGAATTTAAAACAATCAAGTTACCCTCGCAGGGGACCATTTTTGACTACTACATTGACCCGGAAACAAAGAAATTCCTGCCCTGGACAGATAAAGTGCCTAACTTTGAGCTGGATCCCGACATCCCCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127752=AAA_7=PU(3.3=15.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTACCTGCTGGAGTGTC
R:
CGTTGATCCACCACTTGCTGA
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]