GgaINT1011509 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10084423-10084957:+
Coord C1 exon
chr18:10084423-10084705
Coord A exon
chr18:10084706-10084783
Coord C2 exon
chr18:10084784-10084957
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
3' ss Seq
TCTCTTTTGGTTCCCTCCAGCTC
3' ss Score
10.31
Exon sequences
Seq C1 exon
TGTGGTGACCAGTTGGATCGAGAAGAGGGCCGTGCAGTCTGAGAAGGCCAATCTGACGATCCTGTTCGACAAGTACGTGCCCGTGTGCCTGGAGAAGCTCAAGTTTGGCTTCAAGAAGATCACCCCCATCCCTGAGATCACGGTGATACAGATGATCCTGTACCTGCTGGAGTGCCTTCTGACACCACAGAACGTGCCACCGGACTCTCCCCGTGAGCTCTATGAGCTCTTCTTTGTCTTTGCGTGCATCTGGGCCTTTGGCGGGGCCATGTTCCAGGACCAG
Seq A exon
GTTGGGCTGTGATGCTGTGGGAGCCCCAAATGACCACGTTGGCCACGTTCTGAGTTTTTCTCTTTTGGTTCCCTCCAG
Seq C2 exon
CTCACAGATTACCGTGCAGAGTTCAGCAAGTGGTGGGTGAACGAGTTCAAAACCGTCAAGTTTCCTGCTCAGGGGATGATATTCGACTATTACATCGACCCAGAAACAAAGAAATTCATGCCCTGGACTGATAAAGTGCCAACATTCAAACTCGACCCCGAAGTTCCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127752=AAA_7=PU(3.3=15.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCCTGTACCTGCTGGAGT
R:
TTCACCCACCACTTGCTGAAC
Band lengths:
172-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]