BtaINT0050360 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54366868-54367408:+
Coord C1 exon
chr19:54366868-54367150
Coord A exon
chr19:54367151-54367234
Coord C2 exon
chr19:54367235-54367408
Length
84 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCATTTTTGTCTCCCAACAGCTT
3' ss Score
11.05
Exon sequences
Seq C1 exon
GGTGGTAAGCAGCTGGATCGAGAGGCGCAAGGTGCAGTCAGAGAAGGCCAACCTGATGATACTCTTCGACAAGTACCTGCCCACCTGCCTGGACAAGCTCCGCTTCGGGTTTAAGAAGATCACGCCGGTGCCTGAGATCACCATCATCCAGACGATCCTCTACCTGCTGGAGTGCCTCCTAACCGAGAAGAACGCGCCGCCCGACTCCGCCAAGGAGCTCTATGAGCTCTACTTCGTGTTCGCCTGCTTCTGGGCCTTCGGGGGGGCCATGTTCCAGGACCAG
Seq A exon
GTGAGCAGCCGGCCGCCCGGGCGCAGTCTCCCGGCATCCCTCCAGGCGGGGCCCTTTCTGAGCCTCATTTTTGTCTCCCAACAG
Seq C2 exon
CTTGTAGATTATCGGGTCGAGTTCAGCAGGTGGTGGATCAACGAATTTAAGACGATCAAGTTCCCCTCTCAGGGGACGGTCTTCGACTACTACATAGACCCTGACACCAAGAAGTTCCTGCCATGGACAGACAAAGTGCCCGCCTTCGAGCTGGACCCCGACGTCCCGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127752=AAA_7=PU(3.3=15.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATCCTCTACCTGCTGGAGT
R:
ATTCGTTGATCCACCACCTGC
Band lengths:
177-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development