HsaINT0049550 @ hg19
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76482042-76482588:-
Coord C1 exon
chr17:76482306-76482588
Coord A exon
chr17:76482216-76482305
Coord C2 exon
chr17:76482042-76482215
Length
90 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
TTACTTCTGTGTCTCAACAGCTT
3' ss Score
11.01
Exon sequences
Seq C1 exon
GGTGGTGAGCAGCTGGATCGAGAGGCGCAAGGTGCAGTCGGAGAAGGCCAACCTGATGATCCTCTTTGACAAGTACCTGCCCACGTGCCTGGACAAGTTGCGCTTTGGGTTCAAGAAGATCACGCCAGTGCCGGAGATCACGGTGATCCAAACGATTCTGTACCTGCTGGAGTGCCTGCTCACGGAGAAGACCGTGCCCCCCGACTCCCCCAGGGAGCTGTACGAGCTGTACTTCGTGTTCACCTGCTTCTGGGCCTTCGGTGGCGCCATGTTCCAGGACCAG
Seq A exon
GTGATGCACCTGGGGGGCCCGGCCACCCACACAGGGTCTCTCAGCATCCTGCTTAGCTGGGCCCTGATTTTTACTTCTGTGTCTCAACAG
Seq C2 exon
CTTGTGGATTATCGAGTGGAGTTCAGTAAATGGTGGATCAACGAATTCAAGACTATCAAGTTCCCCTCGCAGGGAACGATTTTTGACTACTACATTGATCCTGACACAAAAAAGTTCCTGCCCTGGACAGATAAAGTGCCCTCCTTTGAGCTGGATCCCGATGTCCCACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-DNAH17:NM_173628:45
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127752=AAA_7=PU(3.3=15.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGTGTTCACCTGCTTCTGG
R:
ATCTGTCCAGGGCAGGAACTT
Band lengths:
183-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)