BtaINT0050362 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54367669-54368462:+
Coord C1 exon
chr19:54367669-54367876
Coord A exon
chr19:54367877-54368296
Coord C2 exon
chr19:54368297-54368462
Length
420 bp
Sequences
Splice sites
5' ss Seq
AGGGTACGG
5' ss Score
7.86
3' ss Seq
TACCCCATTCCCTTCTCTAGGGA
3' ss Score
8.92
Exon sequences
Seq C1 exon
GCCTCACTGGTGCACACCACAGAAACCATCCGCATCCGCTACTTCATGGACCTGCTCATGGAGAAGTCGTGGCCAGTCATGCTGGTGGGGAACGCGGGGACAGGCAAGTCGGTGCTAATGGGGGACAAGCTGGACAGCCTGAGCACAGACGACTACCTGGTGCAGGCCGTGCCCTTCAACTTCTACACGACCTCGGCCATGCTGCAGG
Seq A exon
GTACGGTCGAGGACGAGCCCAGGTGCTCACTGCCTGGCCTGGTCACACCCGGTCACTCTTGTCTGACGTGCTGCCCCCCGATCCCACCCCGAGTTGCCCCATCCCTTCTCACCACAGCCCTGGGAGCTCACCAGCTGCCTCTCCACTTCCCACGCTCCCCACCCACTGGTCTCTGTCCCCATAGTGGGGGTACCAGATCCCACAGGGAGCTCACAGCCAGTCTCGGGTGGCCCAAGGTCAATGGGACACAAGTTTCCTGCACCCCTGCCTGGGACCCGTGGTGCCCACCCCTCTCTCCTTCCTTCCCTGGGTGGCTGGAGTCTAACCCGCCTATCCTCGGTGGCCCCCAGGGCTACCCTTTGGGCCGCTGCCTCTGGGATCGACCAGGCACCGTGGGGGCTACCCCATTCCCTTCTCTAG
Seq C2 exon
GGATTCTCGAAAAGCCGCTGGAGAAGAAATCAGGGCGGAACTACGGACCGCCAGGCACCAAGAAGCTGATCTACTTCATCGACGACATGAACATGCCCGAGGTGGACAAGTATGGGACGGTGGCCCCCCACACCCTCATCCGACAGCACATGGACCACGGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.089
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(25.2=100)
A:
NA
C2:
PF127752=AAA_7=FE(20.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACAGAAACCATCCGCATC
R:
GTCCATGTGCTGTCGGATGAG
Band lengths:
348-768
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development