DreINT0058322 @ danRer10
Intron Retention
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10402790-10404562:-
Coord C1 exon
chr6:10404358-10404562
Coord A exon
chr6:10402956-10404357
Coord C2 exon
chr6:10402790-10402955
Length
1402 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
TTCTGGTTGTTTGACTGTAGGTG
3' ss Score
7.5
Exon sequences
Seq C1 exon
ACTGTATTGGTGCACTCTGCAGAGACAATTTGCTTGACATACTTCATCGAGTTACTTCTGCAGAAGGGGAAGCCAGTGATGCTTGTAGGTAATGCTGGTGTTGGGAAAACTATCCTGGTCTGGGACAAGATTTCCAAACTCAAAGAGGAATTCATGGTTGCCAAAGTGCCATTCAATTACTACACAACTTCAGCTATGTTGCAGC
Seq A exon
GTAAGTGAGATTCTGAAAGCTGTATACATTTATATCGCAAGCTTCCATAAAGTCATAAGTGCACTCAAGACATATTCAATAAAACAATATCATGTGATAATGAAAATCAGAAATATTGTTATCATGAACACTTCAAACTAATGTGTATAATTGTTTATAATTGAAACTTGTACAGTGTATTTGAACATTTTGGCAAAAGCAACAAAGGTCGTAATTGTTTTTTTTTTAACTATAGTTTTTTTTTAAATAACATTATTATAGTATCTGTAATAATTGTGGGATTTATAGTTTTTTTTAACTAACATTATTATAGTATCTGTAATAATTGTGGGATTTATAGTTTTTTTATCTAACATTATTATAGTATCTGTAATAATTGTGGGATTTATAGTTTTTTTTAACTAACATTATTATAGTATCTGTAATAATTGTGGGATTTATAGTTTTTTTTATCTAACATTATTATAGTATCTGTAATAATTGTGGGATTTATAGTTTTTTTATCTAACATTATTATAGTATCTGTAATAATTGTGGGATTTATAGTTTTTTTTATCTAACATTATTATAGTATCTGTAATAATTGTGGGATTTTAATGCATTAACTAATGTTTACTAACCCTAGAACCTAGAGACTGTATAATGTTACATTTTTGGACATAAGAATCCCTTTATAATTTAATTTTTAAACATTTGTTCTCTCTGAATATTTACATTCAAGAAAACAATAGACAAATACACATTTTTTGTTGTTATACCTGTTAGGGCATACTCACACTATGTACAGTTGCCTTGAACCGGGCCAAAGCACGCTTGTCCCCCTTCCTGTCTTCCTCGACGGCCTGCACACACATTACATTCTGGCCTGGGCACACTTACATCATCGATGATGCGCTGTTCAGTAAGCGCTCTCGCTCAGCACAGTGGAGATTTCTCTAGTTATATCGTTTTAGTAAAAGTCACGTCTCATCTTTAGTTTGGAGCTTTGACATGCTTTGCACTCACACTACAAGTGAACCGTGCTCTGGCACACCTCTTCCAACCGGACCAGGGCCGGCCAAGTGAACCATGCCTGAGCCCAATTCAGAGCACTCACACTTCTCAAACGATCCGGGAAACGGGCCTGGGCACGATTCAGATAGCATAGTGTGAGTACGCCCTTAAAGTAACCTTTATGTAGCTTAGATCAATATCATGATAATACAATATGTCCTGATAAAAGCTTCTGCAATTGTTGTAACAAGAAAATCTAATACCATCATAAGTCTAGTGCACATAGAGAAAAAACATACAATAAATTTAAAATCCCTTCAAAAGTAAATAAAATCATGATTTTAATCTTAAAAGTTGTCATCACTGTACAAATCCAAGCATTATTTTAATTCTGGTTGTTTGACTGTAG
Seq C2 exon
GTGTGCTGGAGAAGCCTCTGGAAAAAAAGGCAGGGCGGAACTTTGCTCCTCCTGGTACCAAGAAGCTCATTTACTTTGTAGATGACCTGAATATGCCTGAGGTAGATGCGTATGGCACCGTTCAGCCTCATACCCTTATCAGACAGCACCTTGACTACTCCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630:ENSDART00000150908:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(25.1=100)
A:
NA
C2:
PF127752=AAA_7=FE(20.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTCTGCAGAGACAATTTGC
R:
TGGGAGTAGTCAAGGTGCTGT
Band lengths:
357-1759
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]