MmuINT1008734 @ mm10
Intron Retention
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:118018706-118020392:-
Coord C1 exon
chr12:118020188-118020392
Coord A exon
chr12:118018872-118020187
Coord C2 exon
chr12:118018706-118018871
Length
1316 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
AATTATCTATCTATTTTTAGGAA
3' ss Score
10.01
Exon sequences
Seq C1 exon
ACAGTTCTGGTACACACACCAGAGACAACTCGTCTGAGGTATTTTACTGAGTTGCTACTTTGCAAAGGCAAACCGATAATGCTGGTTGGAAATGCAGGAGTGGGGAAAACGGTCTTTTTGAGCAACACCCTGGCAAGTCTCTCTGAGAACTACATAGTATCCTGTGTGCCTTTCAACTACTACACAACATCAGCAGCCCTGCAGA
Seq A exon
GTAAGTGCCTCTTCTCCATCTAGACAGAGGGACAGTTTGCTATGGTCTACACCTCTGCTTAGATCTCTGGTAAATTTTTACTCAGCATCATCCTTGATAAACAGATTTTAACTATTGCTATGAGTTTGTTCTGTGTTTTGTTTTCAAACAAAGAATCACCATATATCTCAGGCTTCCCTGGAACTCCTGTCTCAGCCTCCTCAGTGCCAGGGTGACAGGCATGTGCCACCATGCCTGGCTAAGTTTGACCTTTATTTCACTCATGGTCTAGTTGGGTTATTACTTTATATACTAAAAATTTACATTCACAGTGATAATTATGTCACCTCTAAACCATTTAATTCCCTGTAATTAAATCATGGAACTGGCAATACATGGGTGCTAAAGAGGATCCTCTTGTTCCTCTTTCAAACAAGGAATTGATTCAGGGGAAAAAGTATATTAATGATGTGCCCAACTTTGAGTTATTAATTGCATTTTTCCATTGCATTTATTTAGTGTGTGGGTGGTACACATGTTAAAGGGAAAGAACAACTTGCTGGAGTCAGTTCTATTTTTCCATTCTTTGGGACCCAGAGATCAAGCTCAGGGCAACAGGACCACTGAGCCATCTTAGTGACTTTGTCATTCAGTCACAGATCTACTTGTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTATCTATCTGTCTTTCTGTGAGTGTGTGTATCTGTCTCTCTGTGTGTCTATGTCTAAGAGATAGTGTAGAGATGTATATAGAAAGAGGCACAAGAGGCAATGGAACTAACCATCCAGCATCTGGAAACGTGGAACAGTTGTTTGCCAAAGGTGTTTATCTACTGTGCACTTCTTTGTTTATTTAACAAATGATGAATAACAATAAGTAATTGTCATCAGCAGGCTATAACAACATGTGTGTGCGTGCTCGCGCACACACACACAGAGTCTTCCTTGTCCCCGAGTTATTTGCAGTCTTCAGAGTCAACATGATTAGATACTGTATCTTAGAAACACAGTACTCAGGACCCCTTCCAACCCTGACTCAGAGTCATCAGTAACACAGAGTCACAGACACAGGAAAAACACCACATCGCACTTGGGTGGGTGACCTCTAGTTAACAGGAAGGAGATAAGCGGGGACCAAGTTTACAGACAGTTGCAGCCAGAGACATATCTTTGATGGGAAACCAGCAACATGACATAAACAAATCAGCATGAAAGAGGAAGAATTTGGAGGGGAAATAAGTAAAGACAGGAATGTGACATCCCATCAGCCATTTTGTAGACAAAATTATCTATCTATTTTTAG
Seq C2 exon
GAATTCTTGAAAAACCTCTAGAGAAAAAAGCTGGTCGTAACTATGGTCCAAAAGGAAATAAAAAACTGGTTTATTTCATTGATGATCTGAACATGCCTGAAGTGGATTTGTATGGCACTATCCAGCCTCATGCGCTGCTTCGGCAGCATATTGACTATGGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581:ENSMUST00000084806:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(25.1=100)
A:
NA
C2:
PF127752=AAA_7=FE(20.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACACCAGAGACAACTCGT
R:
TGCCCATAGTCAATATGCTGCC
Band lengths:
356-1672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types