GgaINT0127369 @ galGal3
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1070635-1074067:+
Coord C1 exon
chr18:1070635-1070842
Coord A exon
chr18:1070843-1073901
Coord C2 exon
chr18:1073902-1074067
Length
3059 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GCATCTCTTCCTCTGTACAGGTG
3' ss Score
9.39
Exon sequences
Seq C1 exon
GCATGCCTGGTGCCCACGGCCGAGACGGTCCGGCTGCGGTACTTCATGGATCGGCTCCTGGAGCGCCAGCGCCCCGTGATGCTGGTGGGCAGTGCGGGCACTGGGAAGTCTGTGCTGGTGGGGGACAAACTCTCCTTGCTGGACACGGACGCATACGTGGTGAAGAAGGTCCCGTTCAACTACTACACCACCTCTGCCATGCTGCAAG
Seq A exon
GTGAGGCAGCAGCCAAGCCACGGGACTTCTGTGGCTGTGTCAGCAGAGGGGTGGCAGCGGGCAGAGGGCTTTTTATGTGGGCAGATGGTGATAAGGCTGGGGGTAATGGTTTTAAACTAAAAGAGGGGAGGTTTAGGTCGGATGTAAGGAGGAAATTCTTCACTCAGAGGGCAGTGAGGCCCTGGCACTGCTGCCCAGAGAGCTGTGGGTGCCCCATCCCCAGAGGTGCCCAAGGCCATGGATGGGCCCTGCACAGTCTGAGCTTGTGGGAGGCAACCAGCCCATGGCAAGAGTGAGGCTGGGGGGCTGTGAGGTCCCTTCCAACCCAACCATGCTGTGGTTCTGTGATTCTCTGAGTTCCTCTAGCATGGTACCTCATGCCCAGGAATCCCATAGGGTTCAGACTGGGACATGCACTGCACCTTGGAGGGAAACCATAGGTGAGCTGCCTGGTAACCTACAGGTTTTGTTTGATTTGTGTGCTCTGTGCTGATCCTTTGCAGTCCTCAGCTCCTGGTTTCATGGGAGATGACATTTTCCAACATGAGAATTCTCAACACTGATGATTCCAGTTCAGGGCTGTGCTGAAGTATATGCTTAAATCCACTGCTATTTTGCACAGCATGCAGCTCATTCTTGACTTGAGGTTTGTCTTTAAGATGCTTGAATTTAAGCCATGCAGAATAAGATAGGATTTGTGGCTAGGATCCAAACTGTCCTCAGGATACAATGATGGGAATTGCATCCCAATTACCAGGGAGGATGGTGTGAAGGGAGATAGGCAAGGCTGGGAGCCAGGGCTGCCTGCTGCTGTCCTCTGCATCCCACTGCAGCCCAACGTGTCCCCATGGAGCAGGTCTGCCCCCAGCCTGCATGGGGGCTCAGATCCCTGGGGACCAAGGCAAGGTCAGTTTGCTGTGTGGTTTCTTCAGAAACAAAGAGAAAGATGGGGATTCTTGCAGAGTGGACCTTTTTGGAAATGCTTTTTTAATTTGAGTTGCCCAAAAGACAGAAAAAAGTTATTTTTGTGTGTTTTTATTAACCCAGAATGGAACAACCCAACTTGCTTTGAATTAAGAGCACTTGAGGGTCACCATGAAGCAAAGCAGTTCCTTTAAATCACTCCTCTACAGCCTTTGCTGTTGTGGCCCACGTGGCCTGAAGTCCTTTTGCTCCCCTGGCCCTGTATGAGAGCACCATCCCTGAAGCATCACCGAGGCCTTGTCAGGGGCATGGTGATGGCAGAGGGCTCCCTCTCCCCCTGCCTGGTCCCGTTTTTCCTTTCTGGGCTCTCTCTGGGATGTCCTGGAGCCATTGGATGGGCTGAGCTACTGTGAGCAGTGCTGCCGTTTGTGCACCCCTGGCAGTGTCCCTATTTGCTGCAGCCATCAGCTGTGGTCTGAGATGGGGACATTCCTCCTCTGCAGAGGGGAACATCTTGCTCGGGGATGAAGACATGGCTGCAAGCCTTGTGCTGGGAAGCATGATTGATGCTGCTCGGCAGGCTTCCCCGCTGCTCATTTTTTAGAGCTAATTTGTCCCTTTTGGTGCAGTTTGTCAGTTGGCTGCTTTTTCCCCCAGCAGGCACCTCTTAGATTTGTAAAACATGGATACAAAGCAGTTCTCTTGTTTTTTTTTTTTTTTTAGTTTCCTTTGAAAAAATAAAAAGACCCAAACCTTGAAGCCAGCAATTTCTTACACAAGGTGCCTGTCCCACCCCAGCAGGCAGCATACATGAGTGATGCTTGCAATGTCCCATCTGCAGGGATTGTTTCTTTCCGGTTCCAGCTCAAGTTTGCAGCATCACAGAGGTAGAGATATGGACCCGTACTGTTACTGTGGGATGTGGCTTCCAATTAAAATGCATCTTTCACAGACGTGTCGCTTGATCCTCAGTAATTGCGTTTCAGTGTGATGAATCTCCTGAATACTTGTGTAACCTCAAAAAGGGCTGATTTTATATGTTCATTAAGGGCTAATTAAATTTAAATTAAATGCTTATTTGAAACACTTAATTTAACTTGCTACCAGAAATCTCAAATCCTATGGTTTTATTGAAGGGGGGGAGATGTTCCACAAGATTCATCATCTTTCTCTGCTCAGTTCATTCCTTTGTGCAGCCACTGTCTGCAACCAGAAATGGGCTGAATTTTGAGGGGTGGGGAAGAAAAGCTGTCGGAAATGCATTGGAGCAGTGCAAAAAAAACCAGAACAAATGGTGCCATAAAGCATACATAATTCATAGCTTGAAAAAAACAGAACATAAATCTCCCTTAATAACTTCTGCACATGGTAATGATTGGATTAAATGTACATATTAAACAAGGAGAGTTTTATTAAAGTTTGCAGTCCCGTTTGAATTTGCAGGGCTTGCCTAATTACAAAGAATCACTGCTTGCTGTGCTGCTACAGATGTGCTGACAACCCAGGCTTTGTAAATGGGACTAATTCTGCTCTTGGGACTGGTGGCAGTGAGCCCCTAAGAAAGGAGTGTGCTCCGAGTCAGTCCATGGGAGAGAATCCATCACACCCAACAGAAGACAGCTGCTTCTGTTTGGTTTTCCGCTTGCTGAGCCAGTAAAGGTAGCTCAGAATCAAAGGAACCAATAGCTACGAGACATTATGTGCAGAAAGGTGAAATGGCTTTTATTAAATACTGGCCTGGTGTTGTAAATATTCACTGTGCTTTACAGTGTACAATATGTAACCTCAGCCTTCTGCTGAAATCGAGTAATATTTTCCAAAGCTCTGAAACAAGAAACTCTCCTTTGTGTCCTTTCCCTTGCTCATGCGTGACCCAACTGAAATCTGAGGGCTAATCTGGCAGCTGACATTGGATATGAGTGTTGTTAAATTGTGGGGAGGTTTGGGTATTGTGGGAGGGGAGCAGGGAACCGATGTGGTTCCTGTTAGTAGAAGTAAAGGATGCCTGCCCTGTGCATCACCCAGCTCCTTGGCGTGGAGCTGCATGTGGCGTGGAGCTGGGGGGAGGGGAGCCTGTTTTATTTTTCAGCCATGACCATCTGGTGGTTTAAATTTGCATCTCTTCCTCTGTACAG
Seq C2 exon
GTGTGCTTGAGAAGCCTCTAGAGAAAAAGGCTGGCAGAAATTATGGCCCTCCAGGCACCAAGAAGCTCATCTACTTCATCGATGACATGAACATGCCAGCAGTGGATGCATATGGGACGGTGCAGCCCCATACGCTCATCAGGCAGCACCTGGACTATGGGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000039398:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.089
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(25.4=100)
A:
NA
C2:
PF127752=AAA_7=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]