BtaINT0050815 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31113561-31115352:+
Coord C1 exon
chr19:31113561-31113768
Coord A exon
chr19:31113769-31115302
Coord C2 exon
chr19:31115303-31115352
Length
1534 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
AGGGCAGGAGTTCCACACAGAGC
3' ss Score
-6.09
Exon sequences
Seq C1 exon
GCCTGCCTGGTGCACACCACTGAGACCATATGCCTCTGCTACTTCCTGGAGCGGCTCCTGGCGCGGCGGCGGCCTGTCATGCTGGTGGGAACTGCGGGCACTGGCAAGTCGGTGCTGGTGGGGGCGAAGCTGGCCAGCCTGGACCCTGAGGCGTACCTGGTGAAAAACGTGCCCTTCAACTACTACACCACATCAGCCATGCTGCAGG
Seq A exon
GTGAGTGTCAACACCTCAATAACCAAGTGAATCGGCCTGCTCCTCACTGCTTACAAAGTCAGGTACTCACTCACCAACGAGGGAGGAGATATGGGCCTTTAATCAAAGTGCCAGCAATCTGGGGAGACGGTGGATTCAGTGTCTCCCAAAAACTACTTCCCAAGACTGCTCCATGGTTAAAACGTTTGAACAGAAACAAGTCACCTCAGTTAATCACTGAGATGAGGATGGCGGAGGTCAGAGTCATGGCCATCTCCCCACTGCATGCAGGCTTGTCAGCTCCAGAGATCTTCTAGACCAGGGTCTAATGCCTGATGATCTGAGGTGGAACTGATGTAATAATAATAGAAGTAAAGTGCACAGTACATGTAACACGCTTGATTCATCCCGAAACCATCCCTCATCCCTCAGTCTGTGGAAAAATCGTCTTCCAGACCGGTTCCTGGTGCCAAAAAGGTTGAGGACCGCTGCTCTAAATGTCATCTTGTTCACACAGTTTGATTTGTTTGCAAGATGACTGAAGAGGAATCTTGGGAGAGGTCTGGTCATCTGTTAATTCGGTTCAGTTCAGTCTCTCAGTCATGTCTGACTCTTTGCGACCCCATGGACGGCAGCACGCCAGGCTTCCCTGTCCTTCACCAACTCCCAGACTTTGCTCAAACTCATGTCCATCGAGTCAGTGATGCCATCCCACCATCTCTTCTTCTGTTGTCCCCTTCTCCTCCTGCCTTCAATCTTTCCCAGCATCAGGGTCTTTTGCGATGAGCCAGTTCTTTGCATCCTTTGGCCAAAGTATTGGAGCTTCAGCCTCAGCATCAGTCCTTCCAATGAATATTCAGGGTAGATTTCCTTTAAGATTGACTGGTTTGATATTGCAGTCCAAGGGGCTCTCAAGAGTCTTCTCTAACACCACAGTTCAAAAGCATCAATTTTCGGCACTCAGCTTTCTTTATGGTCCAATTCTCACATCCGTACCTGACTACAGGAAAAACCATAGCTTTGACAATATGGACCTTTATCGGCAAAGTAATGTCTCTGCTTTTTAATATGCTAAGTTGGTCATAGCTTTTCTTCCAAGGAGCAATCAATCTATTAATTGCTTATTTGCCATTTCAGGCAAGTAGAGCATGGGGGTGCCTGGTTTAAAAAGTGAGTTACAGTATGTGTTTGTGTGTGAGTTGCTCATCATGTCCAACTCTTTGTGACCCCATGGACTGTAGTGCTCCAGGCTAGTTACACTATAGCTTCGCTAAAGAGACAAGAAAAGGGGCTTCCTGCTGAGGGCGATTTCCTGCAAGGAGCTGCTCTCATAAAGGGCCCAGGGGCATGGAGGGGGGGACCTGATGTCCTCCACTCTGAGCTTTAACGGAGGTCAGGCACCTCCCCGGCTGACTCCCCTCCCACTCCTCTCTTGCCTGTCCCCTCCCCTATCTGTCCCTCTCTCCAGCACCTTAGCAAGGCTCCCCTTTCCCATCCTTTTTCCCGAAGTGCCTCCCTGGCTGCTGAACTCCTCCAGGGCAGGAGTTCCACACAG
Seq C2 exon
AGCAGGTCAGTGCCTCGATGACAAAGAAAACAGAAAACCCACTGAAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.882
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(25.2=100)
A:
NA
C2:
PF127752=AAA_7=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCACACCACTGAGACCATA
R:
TCTTTCAGTGGGTTTTCTGTTTTCT
Band lengths:
248-1782
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development