RnoINT0048678 @ rn6
Intron Retention
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145924032-145927141:-
Coord C1 exon
chr6:145926937-145927141
Coord A exon
chr6:145924198-145926936
Coord C2 exon
chr6:145924032-145924197
Length
2739 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
AATTATCTCTATATTTTTAGGAA
3' ss Score
8.57
Exon sequences
Seq C1 exon
ACAGTCCTGGTACACACACCAGAGACAACTCGTCTTAGGTATTTTACTGAGTTGCTACTTAACAAAGGCAAACCTCTGATGCTGGTTGGAAATGCGGGAGTGGGAAAAACCGTCTTTTTGAGCGACACCCTGGCAAGTATTTCTGAGGACTATATAGTGTCCCGTGTGCCTTTCAACTACTACACGACATCGGCAGACCTGCAGA
Seq A exon
GTAAGTACCTCTCCTCCATCTGGACAGAAAGGACAGTTCACTGTGGTCGACACATCTGCATACGTCTCTCGTGAATTTTTACTCAGCATCCTCCTGGATAAACAGATTTTAACTATTGCTGTGAGTTTGTTCCGTGTTTTGTTTTCAGAGAAAGTATCACCATATAACCCAGGCTTTCCTGGAACTCCTGTCTCAGCCTCCTGAGTGCCAGGTTGACAGGCATGTGTCACCATATCTGGTTAAGTTTGACCTTTATTTCACTCATACTCTTGTTGGGTTATTAATGTATGTACCAAAAAATTATATTCACAGTGATTATTGTGTCACCACTAAACCATTTAATCCGCTGTAATTAAATCATGGAACTGGCAATACAAGGACTTTAAAGAGGATCCTCTTATTCTCCTTTCAAGCAAGGAATTGATTCAGGAGACAAAAGTATATTGATAACGTGCCCAACTTTGAGTTATTAATTACATTTTTCTAACACATTTATTTAGCATGTGGGTGGGACACATGCTGAAGACAAAGAATAACTTGCTGGAGTCAGTTCTATTTTTTCACTCTGTGGGAGCCAGATATCAAGCTCAGTTCATCAGTCAACAGCACTCATAGCCACTGAGCCATCTTAGTGGCCTTGTCATTTAGTCACATATCCGTGTGTGTGTGTGTGTGTGTGCGCATGTGTGTGTGCGTGTGTGAGTGTGTGCGTGTGCGTGCGCGCGTGTGTGTGCGTGTGCGAGTGTGTGCGTGTGCGTGTGCGCACGTGTGTGCGTGTGTGCGCATGTGTGTGCATGTGTATGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACCTAATGTTGACCTATTAGGTAAATGTGTTGTTGCTGCAGAAGAAGCACAGAGTGGAGGGGACAAAGCATGAAGAGCTAATGTCAGTATTCCTGTCACTGCTCAGCACAAGGAGAGGGACAGTACAGCACTCAGGTCACAATTGTTGATTTGCACTGTTGTGTGGCTTTCCAATCTGTTTAGTTTCTTGCCCCCGCTCCATGGTTCGCCACTGTTATCACGTGAAATGCAGTGTCCTCTGCTTACACAGTGTTCAGCTGGCCTATATTACCCAGAGTATTCCAGAACTAGACAGCTGACCACCCAGTCTACAGCAAAGCTCTGATTGGGCCTATTGGGAAGAGGCATCTGAGGTCAAGAAGACCAGTTCCACTGAACAACAAAACAGCTAATGTAACATGGCCCTAGGCCTGAGGCCACAGTAAAAGCAAAGGAGGTGGCATCAGGACATGGCATGAGATTCCATTTGTAGGTGACCGTTGGTCAGATGGGGTCAGAGTAGATTCCTGTTTGATTTTCATGGCTGACTGGGAGAGTTTTGATCTCATAAGCAGGGACACACGAGCACAGGAAAAAGAAAAGAGCTGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTATGTTTCTGTCTCTGTGTGTCTGTGTCTCTGTTTGTGTATGTTTCTGTCTCTGTGTCTGTCTGTCTGTCTCTCTGTATCTGTTTATGTCTCTGTGTCTGTCTCTGTATGTGTATCTGTCCATTTGTCTGTCTCTGTTGTGTGTCTGTGTATCTTTCTTTCTCTGTGTGTGGGGGGCCCTGTCTCCGTGTGAATCTATGTGATTGTCTCTGTGTGTGTCTGTCTGTCTGTATGTATGTCTCTCTGTGTCTGTCTGTCTCTATGTGTGTCTATTTGTCTCTGTGTCTCTGTCTATTTGTCTCTGTCTCTGTGTGTCTGTCATCTGTCTCTCTGTCTCTGTGTGTGTCTGTATGTATGTATGTCTCTCTGTGTCTGTCTCTGTGTCTGTCTGTCTCTATGTGTGACTATTTGTCTCTGTGTCTCTGTCTCTGTCTGTCTATTTGTCTCTGTCTCTGTGTGTCTGTCATCTGTCTGTCTGTCTCTGTGTGTGTCTGTATGTATGTATGTCTCTCTGTGTCTGTCTCTGTGTCTGTCTCTATGTGTATCTATTTGTCTCTATGTCTCTGTCTCTGTGTCTGTCTCTATGTATCTATTTGTCTCTATCTCTGTGTGTCTGTCATCTGTCTGTCTGTCTATGTGTCTGTCTGTGTCTAAGAGATAGTGTAGAGATGTATTTAGAATGAGGCACACATGACGATAGAACTAACCAACCAGCACCTGGAAATGTGGAACAGTTGTTTGCCAAAGGTGTTTATCTACTGTGCACTTCTTTGTTTATTTAACAAATGATTAATAACAATAAATAATTGTCATCAGCAGGATATAACAACACACACACACACACACACACACACACACACACACACACAGAGTCTTTCTTGTCCCCAAGTTATTTGCTGGCTGAAGAGTCAACATGATTAGATACTATATCTGAGAAACACGGTACTCAGAACCCTTCCCACCCTGACTCAGAGTCATCAGTAACACAGAGGGATAGACACAGGAAAAACACCACATTACACTTGGGTAATATCACACACACTGTCTGGGCGGCCTCTACTTAACAGGAAGGAGATGAGCAGGGACCAAGTTTATAGACCGTTAGTTGCAGCCAGAGACGTATCTCTGATGTGAAACCAGCAACCATGACATAAACAAATCAGCGTGAGAAAGAGGAAGAATTTGGGGGAAAATAAGTAAAGGCAGAAATCTCACATCCCATCAGCCGTTTGTAGACAAAATTATCTCTATATTTTTAG
Seq C2 exon
GAATTCTTGAAAAACCTCTAGAGAAAAAAGCTGGTCGTAACTATGGTCCAAGAGGAAATAAAAAACTGGTTTACTTCATTGATGATCTGAACATGCCTGAAGTGGATTTGTATGGCACCGTTCAGCCTCATGCACTGCTTCGACAGCATATTGACTATGGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451:ENSRNOT00000007233:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(25.1=100)
A:
NA
C2:
PF127752=AAA_7=FE(20.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]