HsaEX1011955 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11869134-11871786:+
Coord C1 exon
chr17:11869134-11869253
Coord A exon
chr17:11871213-11871265
Coord C2 exon
chr17:11871598-11871786
Length
53 bp
Sequences
Splice sites
3' ss Seq
GTTTATTTTCATTTCCCCAGCAT
3' ss Score
7.17
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
CACCTTAATGAAAACCTGGCAAAGCTCACAGCCAGGTTTGAGAAAGCAACAGCAGACAAACTCAAATGTCAGCAAGAAGCCGAAGTGACCGCAGTCACCATCTCCCTTGCCAACCGCCTG
Seq A exon
CATTTGGAAAGGAGAAAGAAGTGGCTAATTTTCTAACATGTTCCACAGACCAG
Seq C2 exon
GTTGGAGGACTCGCTTCTGAAAACGTGAGGTGGGCAGATGCCGTGCAGAACTTCAAACAGCAGGAAAGGACGTTATGTGGAGACATTTTACTTATAACGGCTTTCATTTCCTACCTTGGCTTCTTCACAAAGAAATACCGGCAGAGCCTCCTGGACAGAACTTGGAGGCCCTACCTGAGCCAGCTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(22.8=100),PF097314=Mitofilin=FE(47.6=100)
A:
PF127772=MT=PD(0.7=16.7)
C2:
PF127772=MT=PD(16.9=92.1)
Main Inclusion Isoform:
ENST00000262442fB14012
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTCACAGCCAGGTTTGAG
R:
GCCCACCTCACGTTTTCAGAA
Band lengths:
134-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains