HsaEX6021127 @ hg38
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11869134-11875184:+
Coord C1 exon
chr17:11869134-11869253
Coord A exon
chr17:11871598-11871786
Coord C2 exon
chr17:11874949-11875184
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCTGGCTTTTGAAATGGTAGGTT
3' ss Score
4.09
5' ss Seq
AAAGTACGT
5' ss Score
7.99
Exon sequences
Seq C1 exon
CACCTTAATGAAAACCTGGCAAAGCTCACAGCCAGGTTTGAGAAAGCAACAGCAGACAAACTCAAATGTCAGCAAGAAGCCGAAGTGACCGCAGTCACCATCTCCCTTGCCAACCGCCTG
Seq A exon
GTTGGAGGACTCGCTTCTGAAAACGTGAGGTGGGCAGATGCCGTGCAGAACTTCAAACAGCAGGAAAGGACGTTATGTGGAGACATTTTACTTATAACGGCTTTCATTTCCTACCTTGGCTTCTTCACAAAGAAATACCGGCAGAGCCTCCTGGACAGAACTTGGAGGCCCTACCTGAGCCAGCTGAAA
Seq C2 exon
ACTCCCATTCCAGTCACCCCAGCCCTGGATCCCCTGAGGATGCTGATGGATGATGCTGACGTGGCTGCCTGGCAGAACGAGGGCCTCCCAGCCGACCGCATGTCCGTGGAGAATGCCACCATTCTCATCAACTGTGAGCGCTGGCCACTCATGGTTGACCCTCAGCTACAAGGCATCAAATGGATCAAGAATAAATATGGTGAAGATCTCCGGGTCACGCAGATTGGTCAGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(22.8=100),PF097314=Mitofilin=FE(47.6=100)
A:
PF127772=MT=PD(16.9=92.1)
C2:
PF127772=MT=PD(2.9=6.3),PF097314=Mitofilin=PD(1.2=1.3),PF127812=AAA_9=PU(61.3=82.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTCACAGCCAGGTTTGAG
R:
CAGCGCTCACAGTTGATGAGA
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains