MmuEX6086230 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65911791-65918843:-
Coord C1 exon
chr11:65918724-65918843
Coord A exon
chr11:65915036-65915224
Coord C2 exon
chr11:65911791-65912026
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTCTGCCTTTTAAATGGTAGGTT
3' ss Score
7.4
5' ss Seq
AAAGTACGT
5' ss Score
7.99
Exon sequences
Seq C1 exon
CACCTTAATGAAAACCTGGCGAAGCTCACCACCAAGTTTGAGAAAGCAACAGCAGAGAAGCTCAAGTGTCAGCAAGAAGCTGAACTGACCGCAGGCACCATTTCGCTTGCAAACCGTCTG
Seq A exon
GTTGGAGGCCTTGCATCTGAGAACATAAGGTGGGCAGAGGCTGTGCAGAACTTCAGACAGCAGGAAAGGACGTTATGTGGCGACATTCTGCTTACTACAGCTTTCATCTCCTACTTGGGCTTCTTTACCAAAAAGTACCGAAAGAGCCTCATGGATGGGACCTGGAGACCCTATCTGAGCCAACTGAAA
Seq C2 exon
GTTCCCATTCCAACCACCCCAACTCTGGACCCCCTGAGGATGCTAACCGATGATGCTGAAGTGGCTGCCTGGCAGAATGAGGGTCTCCCTGCTGACCGCATGTCCATGGAGAATGCTACCATCCTCATCAACTGTGAGCGCTGGCCTCTCATGGTCGACCCTCAACTGCAAGGCATTAAATGGATCAAGAACAAATATGGAGAAGAACTCCGGGTCACCCAGATTGGCCAAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF127772=MT=FE(22.7=100),PF097314=Mitofilin=FE(48.1=100),PF083176=Spc7=PD(48.6=85.0)
A:
PF127772=MT=PD(16.9=92.1)
C2:
PF127772=MT=PD(3.5=7.6),PF097314=Mitofilin=PD(0.1=0.0),PF127812=AAA_9=PU(64.4=82.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTTCGCTTGCAAACCGTC
R:
CCTTTTGGCCAATCTGGGTGA
Band lengths:
258-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types