DreEX6020694 @ danRer10
Exon Skipping
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10376366-10380553:-
Coord C1 exon
chr6:10380419-10380553
Coord A exon
chr6:10378939-10379112
Coord C2 exon
chr6:10376366-10376601
Length
174 bp
Sequences
Splice sites
3' ss Seq
ATAATGCCTGTGTATTCCAGTCA
3' ss Score
5.6
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GAGTTGGACGGTAGTTTGGAGACACTGACAGCTGCATTTGAAAAAGCAACCTCGGAGAAATTGCGCTGTCAGGATGAGGTGAACCAGACCAACACAACCATCCTGCTGGCCAACCGCCTGGTCAAGGGTTTAGAG
Seq A exon
TCAGAAAACATACGCTGGGCTCATTCTGTGGCTCAGTACCGTGAACAGGAATCAACTCTTTGTGGAGACGTTCTCCTCACTGCGGCCTTCATCTCTTATGCTGGATCTTTCTCAAAGAGATACAGATATGAGTTGCTCCATAACCTCTGGATGCCCTATCTCCGTGCACAAAAG
Seq C2 exon
GTGCCTATTCCTATGTCGGAGGGCTCAGATCCCATCTCCATGTTAACAGATGATGCTACTATTGCTAAGTGGAATAACGAGGGTTTGCCGGGTGATAAGATGTCCACTCAGAACGCCACTATACTGACCAACTGCGAGCGCTGGCCTCTGCTCATTGACCCCCAGCTGCAGGGCATTAAATGGCTCAAGAGTCGCTACGGCAATAGCCTGAAAGTCATTAACCTCAGTCAGAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630-'59-62,'59-61,60-62=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.8=100),PF083176=Spc7=FE(40.7=100)
A:
PF127772=MT=PD(15.4=91.4),PF083176=Spc7=PD(13.0=24.1)
C2:
PF127812=AAA_9=PU(28.5=82.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGAGACACTGACAGCTGC
R:
TAGTGGCGTTCTGAGTGGACA
Band lengths:
242-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]