MmuEX6083448 @ mm10
Exon Skipping
Gene
ENSMUSG00000018581 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:117954711-117966666:-
Coord C1 exon
chr12:117966532-117966666
Coord A exon
chr12:117960985-117961155
Coord C2 exon
chr12:117954711-117954946
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGGGTAATTTTATCCTTCAGTCA
3' ss Score
5.51
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GATCTGGATCATAATCTGAGCAGACTTACAGCTTCATTTGAAAAGGCAACAGCTGAGAAGGTCCGGTGTCAGGAAGAAGTGAATCAAACCAATAAGACGATCGACCTAGCCAACAAACTTGTCAGTGAACTTGAG
Seq A exon
TCAGAGAAGATTCGATGGGGTCAGTCCATTAAGTCCTTTGAAACTCAAGAGAAGACACTGTGTGGAGATGTGCTCCTCACGGCGGCATTTGTGTCTTACATTGGGTCCTTCACAAGACAGTATCGCCAGGAACTGGTGGACTGCAAGTGGATTCCATTTCTTCAGCAGAAG
Seq C2 exon
GTTTCCATCCCAATAGCAGAAGGGCTGGACTTGATTGCCATGTTGACAGACGATGCTACAATTGCCACCTGGAATAACGAAGGGCTACCCAGCGACAGGATGTCAACTGAAAATGCCACCATTCTAACTCACTGCGAGCGCTGGCCCCTGATGATCGATCCCCAGCAACAGGGAATTAAGTGGATCAAGAATAAGTATGGGCCTGACCTGAAAGTCACACACTTAGGCCAGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'81-76,'81-73,82-76=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.053
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.8=100),PF060097=Laminin_II=FE(50.6=100)
A:
PF127772=MT=PD(15.4=93.0),PF060097=Laminin_II=PD(24.1=36.8)
C2:
PF127812=AAA_9=PU(28.5=82.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGATCGACCTAGCCAACA
R:
TGACTTTCAGGTCAGGCCCAT
Band lengths:
258-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types