DreEX6040414 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19413481-19423466:-
Coord C1 exon
chr16:19423332-19423466
Coord A exon
chr16:19414760-19414933
Coord C2 exon
chr16:19413481-19413716
Length
174 bp
Sequences
Splice sites
3' ss Seq
CAGTAATTCGTTGATTATAGGCA
3' ss Score
2.97
5' ss Seq
CGGGTATGA
5' ss Score
7.63
Exon sequences
Seq C1 exon
GATCTGGACCGGCACCTGCAAAGCCTAACAGCTCAGTTTGAGAGGGCAGCGACTGAGAAACTGCGCTGCCAGGAGGAAGTGACTCGCACCAGCCAGACTATTAAACTGGCCAATCGGCTGGTGGGAGGCCTGCAG
Seq A exon
GCAGAAAATGTGCGCTGGTCGGAGGGTCAGCTGGAGCTGGAGGGTCAGCTGAAGACTGTGTGTGGTGATGTGCTCATAGCAGCTGCTTTTGTCTCCTACGCTGGATATTTCACACAGCCATATCGCCATCAGCTCCTTCACGACATGCTGATTCCTTTCCTCAGAGAACTCCGG
Seq C2 exon
ACCCCTGTCCCGCTGACAGACGGTCTGGACCCTGTACTTATGCTGACTGACCAGGCCACTGTGGCAGGCTGGCAGAACCAGGGCCTGCCAGCTGATCGGCTGTCCATTGAAAACGCAGCCATCCTAAAGTCCAGCCAGCGATGGCCTCTGATCGTGGATCCTCAGCAACAGGCCAGCAAGTGGATCCGAAACCTGTACGGGCCCAGCCTGAGAGTGCTGCAGTATGGTCAGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'38-41,'38-39,39-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.8=100)
A:
PF127772=MT=PD(15.4=91.4)
C2:
PF127812=AAA_9=PU(28.5=82.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCAAAGCCTAACAGCTC
R:
CTGGACTTTAGGATGGCTGCG
Band lengths:
256-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]