BtaEX6026601 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30683647-30709676:+
Coord C1 exon
chr4:30683647-30683781
Coord A exon
chr4:30688350-30688520
Coord C2 exon
chr4:30709441-30709676
Length
171 bp
Sequences
Splice sites
3' ss Seq
ATCAGAATCTTATCTTTCAGTCA
3' ss Score
5.6
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GATTTGGATCGAAATCTGAGCAGACTCACAGATTCATTTGAAAAGGCCATAGCTGAGAAAGTTCGCTGTCAAGAAGAGGTGAACCAAACTAACAAAACTATTGAACTAGCCAACCGACTTGTGAGGGAGCTGGAG
Seq A exon
TCAGAGAAGATTCGCTGGGGCCAGTCTATTAAATCCTTCGAAGCGCAAGAGAAGACGCTCTGTGGAGATGTTCTCCTTACGGCAGCATACGTGTCTTATGTTGGATCCTTTACACAACAGTATCGCCAGGAACTGGTGGACTGCATGTGGGTTCCCTTTCTTCAAGAGAAG
Seq C2 exon
GTCTCCATCCCAATAACTGAAGGCGTGGACGTGATTGCCATGTTGACGGATGATGCCACCACCGCCACCTGGAATAACGAGGGACTGCCCAGTGACAGGATGTCCACGGAGAACGCCGCCATCCTGACGCACTGTGAGCGCTGGCCCCTGCTGATCGACCCCCAGCAGCAAGGGATCAAGTGGATCAAGAACAAGTATGGGACTGACCTGAAAGTCACACACTTGGGCCAGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'75-79,'75-77,76-79=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.076
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.8=100),PF060097=Laminin_II=FE(51.2=100)
A:
PF127772=MT=PD(15.4=93.0),PF060097=Laminin_II=PD(23.3=35.1)
C2:
PF127812=AAA_9=PU(28.5=82.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCAACCGACTTGTGAGGG
R:
GGCCCAAGTGTGTGACTTTCA
Band lengths:
258-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]