RnoEX0028424 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145852888-145866133:-
Coord C1 exon
chr6:145865999-145866133
Coord A exon
chr6:145858991-145859161
Coord C2 exon
chr6:145852888-145853123
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGGGTAATTTTATCCTTCAGTCA
3' ss Score
5.51
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GATCTGGATCATAATCTGAGAAGACTTACAGCTTCATTTGAAAAGGCAACAGCTGAGAAGGTCCGGTGTCAGGAAGAAGTGAATCAAACCAATAAGACGATTGACTTGGCCAACAGACTAGTCAGTGAACTTGAG
Seq A exon
TCAGAGAAGATTCGATGGGGTCAGTCCATTAAGTCTTTTGAAACTCAAGAGAAGACACTGTGTGGAGATGTGCTGCTCACGGCAGCGTTTGTGTCTTACATTGGGTCCTTCACAAGACAGTATCGCCAGGAACTGGTGGACTGCAAGTGGATTCCATTTCTTCAGCAGAAG
Seq C2 exon
GTTTCCATCCCAATAGCGGAAGGCCTGGACATGATTGCCACGTTGACAGACGATGCTACAATTGCCACCTGGAATAACCAAGGGCTACCCAGCGACAGGATGTCAACTGAAAATGCCACCATTCTAACTCACTGCAAGCGCTGGCCCCTGATGATCGATCCCCAGCAACAGGGAATTAAATGGATCAAGAATAAATACGGGCCTGACCTGAAAGTCACACACTTAGGCCAGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'79-80,'79-78,80-80
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.8=100),PF060097=Laminin_II=FE(50.6=100)
A:
PF127772=MT=PD(15.4=93.0),PF060097=Laminin_II=PD(24.1=36.8)
C2:
PF127812=AAA_9=PU(28.5=82.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTCCGGTGTCAGGAAGAA
R:
AATTCCCTGTTGCTGGGGATC
Band lengths:
255-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]