BtaEX6087246 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31183044-31188684:+
Coord C1 exon
chr19:31183044-31183163
Coord A exon
chr19:31185398-31185586
Coord C2 exon
chr19:31188449-31188684
Length
189 bp
Sequences
Splice sites
3' ss Seq
TCTGCTCTTCCAAATGGCAGGTG
3' ss Score
7.13
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
CACCTTAATGAGAACCTGGCCAAACTCACAGCTAAGTTTGAGAAAGCAACAACCGACAAACTCAAATGTCAGCAAGAAGCTGAAGCGACCGCAGGCACCATCTCCCTTGCAAACCGCCTG
Seq A exon
GTGGGAGGCCTGGCCTCTGAAAACGTGAGATGGGCAGAAGCTGTGCAGAACCTCAAGCAACAGGAAAGGAAATTATGTGGAGACATTTTACTCACTGCAGCTTCCATCTCGTACCTGGGCTTCTTTACAAAGCGGTACCGCCAGAGCCTCCTAGACGCGGCGTGGAGGCCCTACCTGAGCCAGCTGCAG
Seq C2 exon
GTTCCAATCCCGGTGACCCCCACCCTGGACCCCCTACGGATGCTGATGGATGATGCCGACGTGGCCACCTGGCAGAATGAGGGCCTCCCTGCAGACCGCATGTCCACGGAGAATGCCGCCATCCTCCTCAGCTGCGAGCGCTGGCCACTCATGGTGGACCCTCAGCTACAAGGCATCAAATGGATCAAGAACAAGTATGGTGAGGACCTCCGGGTCACCCAGATCGGCCAGAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'70-80,'70-79,71-80=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF127772=MT=FE(11.3=100)
A:
PF127772=MT=PD(16.9=92.1)
C2:
PF127812=AAA_9=PU(28.5=82.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCACCATCTCCCTTGCAA
R:
CCGGAGGTCCTCACCATACTT
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]