GgaEX1020261 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1110924-1120100:+
Coord C1 exon
chr18:1110924-1111043
Coord A exon
chr18:1118409-1118597
Coord C2 exon
chr18:1119865-1120100
Length
189 bp
Sequences
Splice sites
3' ss Seq
TGTAATTTGGGAAATTGCAGGTT
3' ss Score
3.29
5' ss Seq
GAAGTAAGC
5' ss Score
6.95
Exon sequences
Seq C1 exon
CGCCTCAATGAGAACCTGGGAAAGCTGACAGCCAAGTTTGAGAAGGCCACTTCTGACAAACTCAAGTGTCAGCAAGAAGCTGAAGCTACAGCATGTACCATCACTCTTGCAAACTGGCTG
Seq A exon
GTTGGAGGGCTTGCTTCTGAGAACGTGAGATGGGCCGAAGCTGTGAAGGACTTCAAACGGCAACAGAGCACTCTGTGTGGAGATGTGCTGCTGGTTACGGCGTTTGTCTCCTACCTGGGGTACTTCACCAGGAAATACCGACAAGACCTCATGGATAGAATCTGGAAGCCGTATTTGCAGCAGTTAGAA
Seq C2 exon
GTGCCGATCCCTGTAACTCCATCCCTAGACCCTCTGACCATGCTGACGGATGATGCTGATATTGCAGCTTGGCAGAATGAGGGGCTGCCAGCCGATCGGATGTCCACTGAAAATGCCACCATTCTGACCAACTGCGAGCGTTGGCCCCTCCTGGTGGATCCCCAGCTGCAGGGAATCAAATGGATCAAAGCAAAGTATGGCGAAGACCTGCGGGTGATCCGAATTGGGCAGAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'57-58,'57-57,58-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(11.3=100)
A:
PF127772=MT=PD(16.9=92.1)
C2:
PF127812=AAA_9=PU(28.5=82.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTGGGAAAGCTGACAGC
R:
TCGCAGTTGGTCAGAATGGTG
Band lengths:
246-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]