MmuEX6086230 @ mm9

Exon Skipping

Gene

ENSMUSG00000056752 | Dnahc9

Description

dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]

Coordinates

chr11:65725293-65732345:-

Coord C1 exon

chr11:65732226-65732345

Coord A exon

chr11:65728538-65728726

Coord C2 exon

chr11:65725293-65725528

Length

189 bp

Sequences

Splice sites

3' ss Seq

TTCTGCCTTTTAAATGGTAGGTT

3' ss Score

7.4

5' ss Seq

AAAGTACGT

5' ss Score

7.99

Exon sequences

Seq C1 exon

CACCTTAATGAAAACCTGGCGAAGCTCACCACCAAGTTTGAGAAAGCAACAGCAGAGAAGCTCAAGTGTCAGCAAGAAGCTGAACTGACCGCAGGCACCATTTCGCTTGCAAACCGTCTG

Seq A exon

GTTGGAGGCCTTGCATCTGAGAACATAAGGTGGGCAGAGGCTGTGCAGAACTTCAGACAGCAGGAAAGGACGTTATGTGGCGACATTCTGCTTACTACAGCTTTCATCTCCTACTTGGGCTTCTTTACCAAAAAGTACCGAAAGAGCCTCATGGATGGGACCTGGAGACCCTATCTGAGCCAACTGAAA

Seq C2 exon

GTTCCCATTCCAACCACCCCAACTCTGGACCCCCTGAGGATGCTAACCGATGATGCTGAAGTGGCTGCCTGGCAGAATGAGGGTCTCCCTGCTGACCGCATGTCCATGGAGAATGCTACCATCCTCATCAACTGTGAGCGCTGGCCTCTCATGGTCGACCCTCAACTGCAAGGCATTAAATGGATCAAGAACAAATATGGAGAAGAACTCCGGGTCACCCAGATTGGCCAAAAGGG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000056752-'54-56,'54-55,55-56=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.017

Domain overlap (PFAM):

C1:

PF127772=MT=FE(22.7=100),PF151201=DUF4561=FE(37.1=100),PF093255=Vps5=PD(39.4=65.0),PF104734=CENP-F_leu_zip=FE(54.2=100),PF083176=Spc7=PD(48.6=85.0),PF097314=Mitofilin=FE(48.1=100),PF141821=YgaB=PD(46.7=70.0)

A:

PF127772=MT=PD(16.9=92.1)

C2:

PF127772=MT=PD(3.5=7.6),PF151201=DUF4561=PD(20.0=26.6),PF097314=Mitofilin=PD(0.1=0.0),PF127812=AAA_9=PU(64.4=82.3)

Main Inclusion Isoform:

ENSMUSP00000079494