RnoEX0028650 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52416924-52424409:-
Coord C1 exon
chr10:52424290-52424409
Coord A exon
chr10:52420372-52420560
Coord C2 exon
chr10:52416924-52417159
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTCTGCCTTTTAAATGGTAGGTT
3' ss Score
7.4
5' ss Seq
AAAGTACGT
5' ss Score
7.99
Exon sequences
Seq C1 exon
CACCTTAATGAAAACCTGGCAAAGCTCACCACCAAGTTTGAGAAAGCAACAGCAGAGAAACTCAAGTGTCAGCAAGAAGCAGAAGTGACTGCGGGCACCATTTCCCTTGCAAACCGTCTG
Seq A exon
GTTGGAGGACTTGCTTCTGAAAACGTACGGTGGGCAGAGGCCGTGCAGAACTTCAGACAGCAGGAAAGGACATTATGTGGTGACATTCTGCTTACTACAGCCTTCATTTCCTACTTGGGCTTCTTTACCAAAAAGTACCGAAAGAGCCTCATGGATGGGACCTGGAAACCCTATCTGAGCCAACTGAAA
Seq C2 exon
GTTCCCATTCCAACCACCCCAACCCTGGACCCCCTGAAGATGCTAACTGATGATGCTGATGTGGCTACCTGGCAGAATGAGGGTCTCCCTGCTGACCGAATGTCCATGGAGAATGCCACCATCCTCATCAACTGTGAGCGCTGGCCACTCATGGTCGACCCTCAACTGCAAGGCATCAAATGGATCAAGAACAAATATGGGGAAGAACTCCGTGTCACACAGATCGGCCAAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'74-69,'74-68,76-69
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(11.3=100)
A:
PF127772=MT=PD(16.9=92.1)
C2:
PF127812=AAA_9=PU(28.5=82.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATTTCCCTTGCAAACCGT
R:
GTGTGACACGGAGTTCTTCCC
Band lengths:
244-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]