HsaEX1012218 @ hg38
Exon Skipping
Gene
ENSG00000146094 | DOK3
Description
docking protein 3 [Source:HGNC Symbol;Acc:HGNC:24583]
Coordinates
chr5:177501907-177504915:-
Coord C1 exon
chr5:177504743-177504915
Coord A exon
chr5:177504091-177504571
Coord C2 exon
chr5:177501907-177503392
Length
481 bp
Sequences
Splice sites
3' ss Seq
TGTGCCCCTGACCTGTGCAGGGC
3' ss Score
8.58
5' ss Seq
CAGGTGGAG
5' ss Score
2.57
Exon sequences
Seq C1 exon
TGGGCGAGTTTCCCGTGGTGGTGCAGAGGACTGAGGCCGCCACCCGCTGCCAGCTGAAGGGGCCGGCCCTGCTGGTGCTGGGCCCAGACGCCATCCAGCTGAGGGAGGCCAAGGGCACCCAGGCCCTCTACAGCTGGCCCTACCACTTCCTGCGCAAGTTCGGCTCCGACAAG
Seq A exon
GGCTGTGGCCGGGGCCATCGCCCGCCAGCGGGAGCGGCTGCCAGAGCTGACCAGGCCCCAGCCCTGCCCCCTGCCACGGGCCACCTCTCTGCCCTCCCTGGACACCCCCGGAGAGCTTCGGGAGATGCCACCAGGACCTGAGCCACCCACGTCCAGGAAAATGCACCTGGCCGAGCCCGGACCCCAGAGCCTGCCGCTACTGCTAGGCCCGGAGCCCAACGATCTGGCGTCCGGGCTCTACGCTTCAGTGTGCAAGCGTGCCAGTGGGCCCCCAGGCAATGAGCACCTCTATGAGAACCTGTGTGTGCTGGAGGCCAGCCCCACGCTGCACGGTGGGGAACCTGAGCCGCACGAGGGCCCCGGCAGCCGCAGCCCCACAACCAGTCCCATCTACCACAACGGCCAGGACTTGAGCTGGCCCGGCCCGGCCAACGACAGTACCCTGGAGGCCCAGTACCGGCGGCTGCTGGAGCTGGATCAG
Seq C2 exon
ATACTTCTGGGAACCCCAGGCGTCAGTCTCCTCATCTGTAAAGGAGAGAGAACCGATGACGTATCAGGCATAATCCTTGATGAGAGTTTGCTGCGTGCCTACTCAGTGCCAGGCGCTGGGGGACACAGCCGTGTTCAGGACAGCCTTGGTCCTGTTCTCCGGGAGCCGACATTCCAGGGGGAGAGAAGTTTCCTGAAGACTTCCATGCTGCGTTCCCTCCTCTGCTCCTGCTCCTGGCGCCATCCTAGGAGCCAGCCACGCACGCAAGCGTCATGCCTCCAGGGCTCTGACTGCCCAGCCCCTCACCGCAACTCCACCTCAGCTGCACACACCCTTGGCACATCCTGAACCTCATTTTCATGACGGACACACAATTTTTGCTCTCTCCTGTCCAAGCCTCATCCTCTGGCCGCCACCTCCTTCCAGCTCACTTCCTTTAGTGCGGCCAGTACCGCCCCTGCCTAGGCATGTCGACCTGCAGGGACCCTTTTCTGGCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146094-'21-27,'21-26,22-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=1.000 C2=0.252
Domain overlap (PFAM):
C1:
PF0217412=IRS=FE(90.5=100)
A:
PF0217412=IRS=PD(1.6=2.1)
C2:
PF0217412=IRS=PD(4.8=2.6)
Main Inclusion Isoform:
ENST00000312943fB14186
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGTGCAGAGGACTGAG
R:
AGGAAACTTCTCTCCCCCTGG
Band lengths:
352-833
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains