HsaINT0051466 @ hg38
Intron Retention
Gene
ENSG00000146094 | DOK3
Description
docking protein 3 [Source:HGNC Symbol;Acc:HGNC:24583]
Coordinates
chr5:177503750-177504915:-
Coord C1 exon
chr5:177504743-177504915
Coord A exon
chr5:177504661-177504742
Coord C2 exon
chr5:177503750-177504660
Length
82 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCCGTGTGCCCTGTGCCCAGGGC
3' ss Score
8.85
Exon sequences
Seq C1 exon
TGGGCGAGTTTCCCGTGGTGGTGCAGAGGACTGAGGCCGCCACCCGCTGCCAGCTGAAGGGGCCGGCCCTGCTGGTGCTGGGCCCAGACGCCATCCAGCTGAGGGAGGCCAAGGGCACCCAGGCCCTCTACAGCTGGCCCTACCACTTCCTGCGCAAGTTCGGCTCCGACAAG
Seq A exon
GTGAGGTGCAGGGGTGGGAAAGGGTGAGGGGCTGACACCCTGGACCCTCCTGCTAATCCCCACCCGTGTGCCCTGTGCCCAG
Seq C2 exon
GGCGTGTTCTCCTTTGAGGCCGGCCGTCGCTGCCACTCGGGTGAGGGCCTCTTTGCCTTCAGCACCCCCTGTGCCCCTGACCTGTGCAGGGCTGTGGCCGGGGCCATCGCCCGCCAGCGGGAGCGGCTGCCAGAGCTGACCAGGCCCCAGCCCTGCCCCCTGCCACGGGCCACCTCTCTGCCCTCCCTGGACACCCCCGGAGAGCTTCGGGAGATGCCACCAGGACCTGAGCCACCCACGTCCAGGAAAATGCACCTGGCCGAGCCCGGACCCCAGAGCCTGCCGCTACTGCTAGGCCCGGAGCCCAACGATCTGGCGTCCGGGCTCTACGCTTCAGTGTGCAAGCGTGCCAGTGGGCCCCCAGGCAATGAGCACCTCTATGAGAACCTGTGTGTGCTGGAGGCCAGCCCCACGCTGCACGGTGGGGAACCTGAGCCGCACGAGGGCCCCGGCAGCCGCAGCCCCACAACCAGTCCCATCTACCACAACGGCCAGGACTTGAGCTGGCCCGGCCCGGCCAACGACAGTACCCTGGAGGCCCAGTACCGGCGGCTGCTGGAGCTGGATCAGGTGGAGGGCACAGGCCGCCCTGACCCTCAGGCAGGTTTCAAGGCCAAGCTGGTGACCCTGCTGAGTCGTGAGCGGAGGAAGGGCCCAGCCCCTTGTGACCGGCCCTGAACGCCCAGCAGAGTGGTGGCCAGAGGGGAGAGGTGCTCCCCCTGGGACAGGAGGGTGGGCTGGTGGGCAAACATTGGGCCCATGCAGACACACGCCTGTGTCCACCCTGGCCTGCAGGAACAAGGCAGGCCGCCTGTGGAGGACCTCAGCCCTGCCCTGCCCTCCTCATGAATAGTGTGCAGACTCACAGATAATAAAGCTCAGAGCAGCTCCCGGCAGGGGCACTCACGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146094:ENST00000357198:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=NA C2=0.756
Domain overlap (PFAM):
C1:
PF0217412=IRS=FE(90.5=100)
A:
NA
C2:
PF0217412=IRS=PD(40.0=17.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGTGCAGAGGACTGAG
R:
CCGGCCTCAAAGGAGAACAC
Band lengths:
181-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development