GgaINT1011789 @ galGal4
Intron Retention
Gene
ENSGALG00000026914 | DOK3
Description
docking protein 3 [Source:RefSeq peptide;Acc:NP_001076832]
Coordinates
chr13:9506210-9507130:-
Coord C1 exon
chr13:9506958-9507130
Coord A exon
chr13:9506882-9506957
Coord C2 exon
chr13:9506210-9506881
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CCTGCCCTCTATCCCAGCAGAAC
3' ss Score
8.97
Exon sequences
Seq C1 exon
TGACGGAGTTCCCAGTGCTGGTGCTGAGGACGGAGGCGGCTGCCCGCTGCGAGCTGCACGGGCACTACGTGCTGGCAGCCCTGCCCCACAGCCTGACGCTGAAGGATGCGCAGTCCCAGCAGCCCCTGCTCACCTGGCCCTACCCGTTCCTCCGCAAATTCGGCCAAGATCAG
Seq A exon
GTAGGTGCACCCTCCCCAGGGCCTCCACCTGCCTATGGCAGGTGCCAGCCCCTCACCCTGCCCTCTATCCCAGCAG
Seq C2 exon
AACATCTTCTCCTTTGAGGCCGGCCGCCGCAGCGACTCGGGCGAGGGCACCTTCACCTTCAGCACCCCGCGAGCCGCAGAGCTGTGCCGGGCCGTGGCCGCCGCCATCGCCTGTCAGCAGCAGGGCCAGGAGAGCCCCCAGCCGTCAGCCCAAGGCCTCAGTAACCAACCCTGGGGGGCAGAGGCTGAAGACCCCCAGTGCAGCCCAACCCTGGGGCGGGCGCATTCGGGCTCACACTCGGCCTCTTATCCATCGCTCAACCTTCTCCGCTTCCCCCCCGTGGAGCCGGAGGCTCCTGCCCCTATAGTGTATGCCTCCATCGCACGGGGCCAACAGCCCCACTTCAGGCCGTGCCCCGGGCAGCCGCTCCCCGAGCATCTCTATGAGAACATCTTCACGGCCCAGCCCCGGCCTCTGGCGGAGGAGGAGGCGGAGGAGGAGGAAGGCCGCTGGGAGCTGGGCTGTCGCCAGGCCCCCGAGGGCCACAGCAGCGAGGCAGCCGTGCCCTACCCCGCCCGCAGCGCCCCGCAGCCCCACACGCAGCGCTGGGCGCCGGGGGGAAGCAGGGGAGGCGCGGAGGAGCCCTCCAGGCCGAAGCCTCAGCGAACCCTCCGGGCCAAACTGGTGCGGCTGCTGAGCCGGGACGGCCCCGGCGCGCGGGACTGGTCGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026914:ENSGALT00000043441:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.798
Domain overlap (PFAM):
C1:
PF0217412=IRS=FE(57.0=100)
A:
NA
C2:
PF0217412=IRS=PD(40.0=17.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCTGAGGACGGAGG
R:
CCGGCCTCAAAGGAGAAGATG
Band lengths:
178-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]