RnoINT0050516 @ rn6
Intron Retention
Gene
ENSRNOG00000013564 | Dok3
Description
docking protein 3 [Source:RGD Symbol;Acc:1311840]
Coordinates
chr17:9642963-9644090:+
Coord C1 exon
chr17:9642963-9643135
Coord A exon
chr17:9643136-9643232
Coord C2 exon
chr17:9643233-9644090
Length
97 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCTGTGTCACTCGTGTGCAGGGT
3' ss Score
8.96
Exon sequences
Seq C1 exon
TTGCTGAGTTTCCGGTGGTGGTGCAGAGGACAGAGGCCACCACCCGCTGCCAGCTGAAGGGACCCTACCTCCTGGTGCTGGGCCAAGATGACATTCAGCTGCGGGAGACTTCCAAGCCCCAGGCCTGCTATAGCTGGCCCTACCGATTCCTGCGCAAGTTTGGCTCTGACAAG
Seq A exon
GTGAGGTGCTAGGTAACCTACTGGTGTCTTGTAGGGAAAGGCGGTAAGTGTCCTGGCTTCTTGACCACTGATCCCTGCCTGTGTCACTCGTGTGCAG
Seq C2 exon
GGTGTGTTCTCTTTTGAGGCTGGCCGCCGCTGCGACTCAGGAGAGGGCCTTTTTGCCTTCAGTAGTCCGCGTGCACCAGACATATGTGGAGCTGTGGCCGCAGCCATTGCCCGTCAGCGGGAGCGTCTTCCAGAGTTGGCCATGTCCCCACCCTGCCCCCTCCCTCGGGCCCTCTCCCTGCCTTCCCTAGAGCCCCCTGGAGAGCTTCGGGAGGTGGCCCCAGAATATGAGCTGGCCCCTTCCAGAAAGCTGCCTCTAACTGATCCTGGACCTCAAAGCCTACCCCTGCTGCTCAGCCCCACACAAGACGGGACAGCCTCCAGTCTCTATGCGTCTGTGTGCAAGCAGACCAGCAAGCACAAAGCCACCGTGGAGCATCTCTACGAGAACGTGTTCATGCTGGAGGCCAGCCCTGGGCTGTCCAACGGGGGTCCTGAGGCCCAAGAGGGCCCTCCTGGTGGCCGCAGCCCCCTGGGCAGCCCCATCTACCATAACAGCGAGGAGCTGAGTTGGCCTGGCTCGGCCCACGACAGCAATCTGGAAGCCCAGTACCGGAGGCTGCTGGAGCTGGAGCTCGATGATGCTGGAGGCGCCGGGCGTCCTGGAGCACAGACAGGCATCAAGGCCAAGCTGGTAACCCTGCTGACTCGTGAACGGAAGAAGGGCCCCGCCCCCTGCGACCGGCCCTGAAGGCCCGTTTGGCCTCAGCAGGGCAGAGGTGATGTCCTAAAAAAACATGAACAACTTTTGACCTGCAGGGACAAGCCAGGAGGCTTAGTGAGGAGCCACACTCTGCCTACCTCCTTCCCTCAGACTGTGTACAGATTGACCAGTAATAAAGCTTGCCTATCAACTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013564:ENSRNOT00000018232:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.611
Domain overlap (PFAM):
C1:
PF0217412=IRS=FE(57.0=100)
A:
NA
C2:
PF0217412=IRS=PD(40.0=17.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCGATTCCTGCGCAAGTT
R:
GGACATGGCCAACTCTGGAAG
Band lengths:
181-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]