BtaINT0052082 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025401 | DOK3
Description
docking protein 3 [Source:HGNC Symbol;Acc:HGNC:24583]
Coordinates
chr7:40362436-40363389:-
Coord C1 exon
chr7:40363217-40363389
Coord A exon
chr7:40363117-40363216
Coord C2 exon
chr7:40362436-40363116
Length
100 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TCGTACCGCCCCCTGCCCAGGGC
3' ss Score
5.89
Exon sequences
Seq C1 exon
TGGGCGAGTTCCCGGTGGTGGTGCAGAGGACGGAGGCAGCCACCCGCTGCCAGCTGAAGGGGCCCTACCTCCTGCGGCTGGGCCAGGACGCTATCCAGCTGAGCGAACCGGCCAACCCGCAGGCGCTCTACACCTGGCCCTACTGCTTCCTGCGAAAGTTCGGCTCCGACAAG
Seq A exon
GTGAGGTGCTGGGTCGCCGCCCCGCTGGTCCCGCAGGGAAGGGTGGCGGGTGGCGCGCGATTCCTGAAACCGCTGACTCCTCGTACCGCCCCCTGCCCAG
Seq C2 exon
GGCGTGTTCTCCTTTGAAGCCGGCCGCCGCTGCGACTCGGGCGAGGGCCTCTTCGCCTTCAGCAGCGCCCGCGCCCGCGACCTGTGCGGGGCCTTGGCCGCCGCCATCGCCCGCCAGCGGGAGCGGCTCCCGGGGCCCCGGCCCTGCCCTCTGCCGCGGGCCACCTCGCTGCCCTCGCTGGAGCCTCCAGGCGAGCTGCGGGAGGGGCCCCCGCGGCCCGAGGCGCCCGGCTCGCGGAAGATGCGCGCGGCCGAGCCCGGGCCACAGAGTCTGCCGCCGCTGCTGGGCCCCGCGGTCTCCGAGGAGCCGCCGGCAGTGCTCTACGCGTCCGTGTGCAAGCGGGCCAGCGTGCCCCCGAGCGCCGCCGCCGAACACCTGTACGAGAACTTGTGCGCGCCCGACGCCGGCTGCCGGAAGCTGGTGGAAGAGGGCCCGGGCGGCGGCAACCCCCCGGACAGCCCCATCTACCACAACAGCCAGGACCTGGGCTGGCCCGGCGCGGCCCACGACAGCAGCCTGGAGGCCCAGTACCGGCGGTTGCTGGAGCTGGAGCTGGCGGATAACGGCGACGAGGCCTCGGGGTCTGGCCGCCCGGGTGCGCACTCAGGCTTCAAGGCCAAGCTGGTGACATTTCTGAGCCGAGAGCGGAAGAAGGGCCCGGCCCCCTGCGACCGGCCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025401:ENSBTAT00000035679:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.575
Domain overlap (PFAM):
C1:
PF0217412=IRS=FE(57.0=100)
A:
NA
C2:
PF0217412=IRS=PD(40.0=17.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTTCCCGGTGGTGGT
R:
CTGCTGAAGGCGAAGAGGC
Band lengths:
234-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]