HsaEX1013567 @ hg38
Exon Skipping
Gene
ENSG00000214860 | EVPLL
Description
envoplakin like [Source:HGNC Symbol;Acc:HGNC:35236]
Coordinates
chr17:18383492-18388288:+
Coord C1 exon
chr17:18383492-18383587
Coord A exon
chr17:18386333-18386464
Coord C2 exon
chr17:18388219-18388288
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTTTAACTTATTTCCATAAGACG
3' ss Score
0.33
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
GCCCACCAGGAGGCCCTGAAGATGGAGTGGCAGAACTTCCTGAACCTGTGCATCTGCCAGGAGACCCAGCTCCAGCACGTGGAGGACTACAGCCGG
Seq A exon
ACGCTGTCTCCAAATAAGATCACATTCTCAGGCACTGGGGCTAAGGACATCAACATAGGAATTTCAGGGGACAAATTCAACCCACCACATAGGCCCTCCCTGAGGCCACCTCTGCGTCATCTTTGTCTACAG
Seq C2 exon
ATTCTGTGTCCATCTTCCTCTCCTCATTGACTCTGCATGAAGGGGATTTCTGGTGGAGTAAGGGTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214860_MULTIEX1-2/2=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.364 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000399134fB15076
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGCCCTGAAGATGGAGT
R:
TGCTACCCTTACTCCACCAGA
Band lengths:
157-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains