HsaEX1013566 @ hg38
Exon Skipping
Gene
ENSG00000214860 | EVPLL
Description
envoplakin like [Source:HGNC Symbol;Acc:HGNC:35236]
Coordinates
chr17:18383271-18388288:+
Coord C1 exon
chr17:18383271-18383378
Coord A exon
chr17:18383492-18383587
Coord C2 exon
chr17:18388219-18388288
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTCCGTGCTGCGGTACCCAGGCC
3' ss Score
5.45
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
Exon sequences
Seq C1 exon
CACTTCAAGCAGCACGAGCTGCTGAGCCAGGAGCAGAGCGTAAACCAGCTGGAGGAGGACGGCAAGCGCATGGTGGAGCTGCGGCACCCCGCGGTGGGGCCCATCCAG
Seq A exon
GCCCACCAGGAGGCCCTGAAGATGGAGTGGCAGAACTTCCTGAACCTGTGCATCTGCCAGGAGACCCAGCTCCAGCACGTGGAGGACTACAGCCGG
Seq C2 exon
ATTCTGTGTCCATCTTCCTCTCCTCATTGACTCTGCATGAAGGGGATTTCTGGTGGAGTAAGGGTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214860_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCAAGCAGCACGAGC
R:
ACTCCACCAGAAATCCCCTTCA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains