RnoEX6050664 @ rn6
Exon Skipping
Gene
ENSRNOG00000009343 | Evpl
Description
envoplakin [Source:RGD Symbol;Acc:1306141]
Coordinates
chr10:105110278-105112025:-
Coord C1 exon
chr10:105111918-105112025
Coord A exon
chr10:105111698-105111793
Coord C2 exon
chr10:105110278-105110403
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCACCCCGCTGTGCTCCAGGCC
3' ss Score
6.99
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
CACTTCAAGCAGCATGAGCTGCTGGCCCAGGAACAGAGTATAAACCAGTTGGAGGATGACGCAGAGCGCATGGTCGAGCTCGGGCACCCGGCCATTGGGCCCATCCAG
Seq A exon
GCCCACCAGGAGGCCCTCAAAATGGAGTGGCAGAATTTCCTAAACCTGTGCATCTGTCAGGAGAGCCAGCTGCAGCATGTGGAGGACTACCGAAGG
Seq C2 exon
TTCCAGGAAGAGGCCGACTCAGCCAGCCAGACCCTGGCAAAGCTCAGCTCCAACCTGGACACCAAGTACAGCTTTGGCGCTGGGGACTCCTCTGTCTCCCCAACAGAGCTCCTGCTACAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009343-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.125 C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCAGTTGGAGGATGACGC
R:
CTGTTGGGGAGACAGAGGAGT
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]