DreEX6021379 @ danRer10
Exon Skipping
Gene
ENSDARG00000019808 | evpla
Description
envoplakin a [Source:ZFIN;Acc:ZDB-GENE-030829-19]
Coordinates
chr6:17966541-17967144:+
Coord C1 exon
chr6:17966541-17966648
Coord A exon
chr6:17966861-17966956
Coord C2 exon
chr6:17967034-17967144
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGTGCTTTGGGTGTGCCCAGGCC
3' ss Score
7.45
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
AACTTCAAGAATAACAGTCTGCTGGCACATGAAAGTGAGGTCAACAAATTGCAGGATGATGGTGACAGATTGATTGAGTTGAAACATCCTGCTGCCAGCACTGTGCAG
Seq A exon
GCCCAGAGAGACACTGTAAGAAATGAATGGCAGAAGTTTCTGAATCTTTGCATCTGTCAGGAAACCCATCTGGACAATATAGAGGAGTACAAAAAG
Seq C2 exon
TACCAACTGGATGCAGACACCTTGTCTGAGTCTTTGTCTAAGCTTGGCTCCACTGTTGATGCCAAATCTGTCAATGGCAAAACCAGCACTGAAATTCAGATGCAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019808-'7-10,'7-8,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=0.078 C2=0.514
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(33.0=100)
A:
PF0043516=Spectrin=PD(23.6=78.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCACATGAAAGTGAGGT
R:
ATTTCAGTGCTGGTTTTGCCA
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]